Name: Flavobacterium ponti GSW-R14
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133578

Type strain:

Species: Flavobacterium ponti

Strain Designation: GSW-R14

Culture col. no.: KCTC 22802, CCUG 58402

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 665133 (species)

SI-ID 411659

CCUG 58402

Section

Flavobacterium ponti GSW-R14 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium ponti**
	Full Scientific Name (LPSN)	Flavobacterium ponti Yoon et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29635]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #29635]	Cell length	2.9 µm

[Ref.: #29635]	Cell width	0.55 µm

[Ref.: #29635]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #29635]	Motility	no

[Ref.: #61681]

Incubation period

3 days

[Ref.: #29635]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29635]	growth	10-35 °C
[Ref.: #29635]	optimum	25 °C
[Ref.: #61681]	growth	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #29635]	Temperature range	mesophilic
[Ref.: #61681]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29635]			optimum	7.5
[Ref.: #29635]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29635]	Oxygen tolerance	anaerobe
[Ref.: #61681]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29635]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29635]		NaCl		growth	0-6	%
[Ref.: #29635]		NaCl		optimum	2	%

[Ref.: #29635]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-6

	Enzyme	Enzyme activity	EC number
[Ref.: #29635]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29635]	catalase	+	1.11.1.6
[Ref.: #29635]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29635]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29635]	Sample type/isolated from	seawater

[Ref.: #61681]	Sample type/isolated from	Sea water
[Ref.: #61681]	Sampling date	2008
[Ref.: #61681]	Geographic location (country and/or sea, region)	Geoje
[Ref.: #61681]	Country	Republic of Korea
[Ref.: #61681]	Country ISO 3 Code	KOR
[Ref.: #61681]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Geoje Island in the South Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ370387 (>99% sequence identity) for Flavobacterium ponti from Microbeatlas

Aquatic Samples	589
Soil Samples	55
Animal Samples	56
Plant Samples	31
Total Samples	731

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29635]	Flavobacterium ponti strain GSW-R14 16S ribosomal RNA gene, partial sequence	GQ370387	1438	GenBank	665133 tax ID

[Ref.: #29635]

GC-content

31.4 mol%

Availability in culture collections External links

[Ref.: #29635]

Culture collection no.

KCTC 22802, CCUG 58402

[Ref.: #91514]

SI-ID 411659

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium maris sp. nov. isolated from shallow sediments of the Sea of Japan.	Romanenko LA, Tanaka N, Svetashev VI, Kurilenko VV, Mikhailov VV	Arch Microbiol	10.1007/s00203-015-1128-x	2015	*
Phylogeny	Flavobacterium ponti sp. nov., isolated from seawater.	Yoon JH, Park S, Kang SJ, Oh SJ, Myung SC, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.017582-0	2010	*
Phylogeny	Flavobacterium orientale sp. nov., isolated from lake water.	Li AH, Liu HC, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001544	2017	*
Phylogeny	Flavobacterium ahnfeltiae sp. nov., a new marine polysaccharide-degrading bacterium isolated from a Pacific red alga.	Nedashkovskaya OI, Balabanova LA, Zhukova NV, Kim SJ, Bakunina IY, Rhee SK	Arch Microbiol	10.1007/s00203-014-1010-2	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29635

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26025 (see below)

#61681 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58402
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91514

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID411659.1 )

#26025

IJSEM 81 2011 ( DOI 10.1099/ijs.0.017582-0 , PubMed 20154326 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Flavobacterium ponti in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF