Name: Halogranum rubrum RO2-11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133561

Type strain:

Species: Halogranum rubrum

Strain Designation: RO2-11

Culture col. no.: CGMCC 1.7738, JCM 15772

Strain history: H.-L. Cui RO2-11.

NCBI tax ID(s): 553466 (species)

Section

Halogranum rubrum RO2-11 is an aerobe, Gram-negative, motile archaeon that was isolated from Marine solar saltern.

Gram-negative
motile
ovoid-shaped
aerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Haloferacaceae*
	Genus	*Halogranum*
	Species	**Halogranum rubrum**
	Full Scientific Name (LPSN)	Halogranum rubrum Cui et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29526]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.806

[Ref.: #29526]	Cell length	1.5 µm

[Ref.: #29526]	Cell width	1.5 µm

[Ref.: #29526]	Cell shape	ovoid-shaped

[Ref.: #29526]	Motility	yes

[Ref.: #29526]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29526]	growth	20-50 °C
[Ref.: #29526]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #29526]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29526]			optimum	7.5
[Ref.: #29526]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29526]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.969

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29526]		NaCl		growth	15.08-24.94	%
[Ref.: #29526]		NaCl		optimum	22.62	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29526]	acetate ChEBI	+	carbon source
[Ref.: #29526]	alanine ChEBI	+	carbon source
[Ref.: #29526]	galactose ChEBI	+	carbon source
[Ref.: #29526]	glucose ChEBI	+	carbon source
[Ref.: #29526]	glutamate ChEBI	+	carbon source
[Ref.: #29526]	glycerol ChEBI	+	carbon source
[Ref.: #29526]	lactate ChEBI	+	carbon source
[Ref.: #29526]	lactose ChEBI	+	carbon source
[Ref.: #29526]	malate ChEBI	+	carbon source
[Ref.: #29526]	maltose ChEBI	+	carbon source
[Ref.: #29526]	mannose ChEBI	+	carbon source
[Ref.: #29526]	nitrate ChEBI	+	reduction
[Ref.: #29526]	ornithine ChEBI	+	carbon source
[Ref.: #29526]	pyruvate ChEBI	+	carbon source
[Ref.: #29526]	sorbitol ChEBI	+	carbon source
[Ref.: #29526]	succinate ChEBI	+	carbon source
[Ref.: #29526]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #29526]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #29526]	catalase	+	1.11.1.6
[Ref.: #29526]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29526]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29526]	Sample type/isolated from	Marine solar saltern

[Ref.: #67770]	Sample type/isolated from	Rudong solar saltern
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jiangsu
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Condition	#Saline	-
#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU887283 (>99% sequence identity) for Halogranum from Microbeatlas

Aquatic Samples	147
Soil Samples	34
Animal Samples	1
Plant Samples	4
Total Samples	186

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29526]	Halogranum rubrum strain RO2-11 16S ribosomal RNA gene, complete sequence	EU887283	1473	GenBank	553466 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halogranum rubrum CGMCC 1.7738	GCA_900114455	scaffold	GenBank	553466 tax ID
[Ref.: #66792]	Halogranum rubrum CGMCC 1.7738	2619618990	draft	JGI IMG/M	553466 tax ID	*
[Ref.: #66792]	Halogranum rubrum strain CGMCC 1.7738	553466.4	wgs	PATRIC	553466 tax ID	*

[Ref.: #29526]	GC-content	55.7 mol%
[Ref.: #67770]	GC-content	55.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halogranum rubrum CGMCC 1.7738 NCBI: GCA_900114455.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #29526]

Culture collection no.

CGMCC 1.7738, JCM 15772

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halogranum salarium sp. nov., a halophilic archaeon isolated from sea salt.	Kim KK, Lee KC, Lee JS	Syst Appl Microbiol	10.1016/j.syapm.2011.03.007	2011	*
Phylogeny	Halogranum gelatinilyticum sp. nov. and Halogranum amylolyticum sp. nov., isolated from a marine solar saltern, and emended description of the genus Halogranum.	Cui HL, Yang X, Gao X, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.024976-0	2010	*
Phylogeny	Halogranum rubrum gen. nov., sp. nov., a halophilic archaeon isolated from a marine solar saltern.	Cui HL, Gao X, Sun FF, Dong Y, Xu XW, Zhou YG, Liu HC, Oren A, Zhou PJ	Int J Syst Evol Microbiol	10.1099/ijs.0.014928-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29526

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25923 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#25923

IJSEM 1366 2010 ( DOI 10.1099/ijs.0.014928-0 , PubMed 19671729 )

* These data were automatically processed and therefore are not curated

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Halogranum rubrum CGMCC 1.7738

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