Name: Cellulosilyticum ruminicola H1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133558

Type strain:

Species: Cellulosilyticum ruminicola

Strain Designation: H1

Culture col. no.: CGMCC 1.5065, JCM 14822, DSM 23859

Strain history: <- JCM <- X. Dong, Chinese Acad. Sci. (CAS), Beijing; H1 <- CGMCC

NCBI tax ID(s): 1294025 (strain), 425254 (species)

SI-ID 403406

DSM 23859

Section

Cellulosilyticum ruminicola H1 is an anaerobe, spore-forming, Gram-negative bacterium that was isolated from Rumen of yak.

Gram-negative
rod-shaped
spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Cellulosilyticum*
	Species	**Cellulosilyticum ruminicola**
	Full Scientific Name (LPSN)	Cellulosilyticum ruminicola Cai and Dong 2010

Information on morphological and physiological properties Morphology

[Ref.: #29516]	Gram stain	negative
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #29516]	Cell length	3.25 µm

[Ref.: #29516]	Cell width	0.65 µm

[Ref.: #29516]	Cell shape	rod-shaped

[Ref.: #29516]	Motility	no

[Ref.: #29516]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68944]

Culture medium

CELLULOSILYTICUM MEDIUM (DSMZ Medium 666a)

[Ref.: #68944]

Culture medium growth

[Ref.: #68944]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #29516]	growth	25-45 °C
[Ref.: #29516]	optimum	38 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #68944]	growth	37 °C

[Ref.: #29516]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68944]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29516]			optimum	6.7
[Ref.: #29516]			growth	6-7.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29516]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.587

[Ref.: #29516]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %91
[Ref.: #69480]	Ability of spore formation	yes Confidence in %98.59

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29516]	Sample type/isolated from	Rumen of yak

[Ref.: #67770]	Sample type/isolated from	Rumen of Yak
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF382648 (>99% sequence identity) for Cellulosilyticum ruminicola subclade from Microbeatlas

Aquatic Samples	58
Soil Samples	155
Animal Samples	1744
Plant Samples	72
Total Samples	2029

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #68944]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29516]	Cellulosilyticum ruminicola strain H1 16S ribosomal RNA gene, partial sequence	EF382648	1547	GenBank	1294025 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cellulosilyticum ruminicola JCM 14822	GCA_001311925	contig	GenBank	1294025 tax ID
[Ref.: #66792]	Cellulosilyticum ruminicola JCM 14822	1294025.4	wgs	PATRIC	1294025 tax ID	*
[Ref.: #66792]	Cellulosilyticum ruminicola JCM 14822	2667527401	draft	JGI IMG/M	1294025 tax ID	*

[Ref.: #29516]	GC-content	33.7 mol%
[Ref.: #67770]	GC-content	33.7 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #68944]	GC-content	32.8 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cellulosilyticum ruminicola JCM 14822 PATRIC: 1294025.4
[Ref.: #69481]	spore-forming	yes	91	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cellulosilyticum ruminicola JCM 14822 PATRIC: 1294025.4
[Ref.: #69480]	motile	yes	75.425	yes
[Ref.: #69480]	gram-positive	yes	50.718	yes
[Ref.: #69480]	anaerobic	yes	98.507	yes
[Ref.: #69480]	aerobic	no	97.746	yes
[Ref.: #69480]	halophile	no	90.296	no
[Ref.: #69480]	spore-forming	yes	96.416	yes
[Ref.: #69480]	glucose-util	yes	88.399	no
[Ref.: #69480]	flagellated	yes	56.411	yes
[Ref.: #69480]	thermophile	no	96.579	yes
[Ref.: #69480]	glucose-ferment	yes	73.604	no

Availability in culture collections External links

[Ref.: #29516]

Culture collection no.

CGMCC 1.5065, JCM 14822, DSM 23859

[Ref.: #91503]

SI-ID 403406

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cellulosilyticum ruminicola gen. nov., sp. nov., isolated from the rumen of yak, and reclassification of Clostridium lentocellum as Cellulosilyticum lentocellum comb. nov.	Cai S, Dong X	Int J Syst Evol Microbiol	10.1099/ijs.0.014712-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29516

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25913 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68944

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23859

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91503

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403406.1 )

#25913

IJSEM 845 2010 ( DOI 10.1099/ijs.0.014712-0 , PubMed 19661493 )

* These data were automatically processed and therefore are not curated

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Cellulosilyticum ruminicola JCM 14822

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