Name: Kistimonas asteriae KCCM 90076
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133556

Type strain:

Species: Kistimonas asteriae

Culture col. no.: KCCM 90076, JCM 15607, KMD 001, DSM 21796, NCIMB 14710

Strain history: H. C. Kwon KMD 001.

NCBI tax ID(s): 517724 (species)

Section

Kistimonas asteriae KCCM 90076 is an aerobe, Gram-negative, motile bacterium that was isolated from Isolated from starfish.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Endozoicomonadaceae*
	Genus	*Kistimonas*
	Species	**Kistimonas asteriae**
	Full Scientific Name (LPSN)	Kistimonas asteriae Choi et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29496]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #29496]	Cell shape	rod-shaped

[Ref.: #29496]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %93.666

[Ref.: #29496]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29496]	growth	15-30 °C
[Ref.: #29496]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #29496]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29496]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29496]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29496]		NaCl		growth	<9	%

[Ref.: #67770]

Observation

quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29496]	cellobiose ChEBI	+	carbon source
[Ref.: #29496]	fructose ChEBI	+	carbon source
[Ref.: #29496]	glucose ChEBI	+	carbon source
[Ref.: #29496]	glycerol ChEBI	+	carbon source
[Ref.: #29496]	glycogen ChEBI	+	carbon source
[Ref.: #29496]	L-arabitol ChEBI	+	carbon source
[Ref.: #29496]	lactose ChEBI	+	carbon source
[Ref.: #29496]	maltose ChEBI	+	carbon source
[Ref.: #29496]	mannitol ChEBI	+	carbon source
[Ref.: #29496]	melibiose ChEBI	+	carbon source
[Ref.: #29496]	raffinose ChEBI	+	carbon source
[Ref.: #29496]	ribose ChEBI	+	carbon source
[Ref.: #29496]	salicin ChEBI	+	carbon source
[Ref.: #29496]	sucrose ChEBI	+	carbon source
[Ref.: #29496]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29496]		alkaline phosphatase	+	3.1.3.1
[Ref.: #29496]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29496]	Sample type/isolated from	Isolated from starfish

[Ref.: #67770]	Sample type/isolated from	Skin of Asterias amurensis
[Ref.: #67770]	Host species	Asterias amurensis
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Echinodermata

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU599216 (>99% sequence identity) for Kistimonas from Microbeatlas

Aquatic Samples	275
Soil Samples	9
Animal Samples	27
Plant Samples	11
Total Samples	322

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29496]	Kistimonas asteriae strain KMD 001 16S ribosomal RNA gene, partial sequence	EU599216	1506	GenBank	517724 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kistimonas asteriae strain KMD 001	517724.3	wgs	PATRIC	517724 tax ID	*

[Ref.: #29496]	GC-content	47.6 mol%
[Ref.: #67770]	GC-content	47.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kistimonas asteriae strain KMD 001 PATRIC: 517724.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kistimonas asteriae strain KMD 001 PATRIC: 517724.3
[Ref.: #69480]	gram-positive	no	98.652	yes
[Ref.: #69480]	anaerobic	no	98.404	no
[Ref.: #69480]	halophile	yes	63.901	no
[Ref.: #69480]	spore-forming	no	96.212	no
[Ref.: #69480]	glucose-util	yes	89.347	yes
[Ref.: #69480]	aerobic	yes	76.01	yes
[Ref.: #69480]	thermophile	no	98.72	yes
[Ref.: #69480]	motile	yes	91.548	yes
[Ref.: #69480]	flagellated	yes	85.138	no
[Ref.: #69480]	glucose-ferment	no	70.177	no

Availability in culture collections External links

[Ref.: #29496]

Culture collection no.

KCCM 90076, JCM 15607, KMD 001, DSM 21796, NCIMB 14710

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kistimonas alittae sp. nov., a gammaproteobacterium isolated from the marine annelid Alitta succinea.	Ellis JC, Thomas MS, Lawson PA, Patel NB, Faircloth W, Hayes SE, Linton EE, Norden DM, Severenchuk IS, West CH, Brown JW, Plante RG, Plante CJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003137	2018	*
Phylogeny	Kistimonas scapharcae sp. nov., isolated from a dead ark clam (Scapharca broughtonii), and emended description of the genus Kistimonas.	Lee J, Shin NR, Lee HW, Roh SW, Kim MS, Kim YO, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.038422-0	2012	*
Phylogeny	Kistimonas asteriae gen. nov., sp. nov., a gammaproteobacterium isolated from Asterias amurensis.	Choi EJ, Kwon HC, Sohn YC, Yang HO	Int J Syst Evol Microbiol	10.1099/ijs.0.014282-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29496

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25896 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#25896

IJSEM 938 2010 ( DOI 10.1099/ijs.0.014282-0 , PubMed 19661507 )

* These data were automatically processed and therefore are not curated

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Kistimonas asteriae strain KMD 001

Kistimonas asteriae strain KMD 001

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