Name: Flavobacterium sinopsychrotolerans 0533
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133555

Type strain:

Species: Flavobacterium sinopsychrotolerans

Strain Designation: 0533, 533

Culture col. no.: CGMCC 1.8704, JCM 16398, CIP 110296

Strain history: CIP <- 2011, CGMCC <- M. Xu: strain 0533

NCBI tax ID(s): 604089 (species)

SI-ID 376101

CGMCC 1.8704, JCM 16398, CIP 110296

Section

Flavobacterium sinopsychrotolerans 0533 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from The China No. 1 glacier.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium sinopsychrotolerans**
	Full Scientific Name (LPSN)	Flavobacterium sinopsychrotolerans Xu et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29491]	Gram stain	negative
[Ref.: #122634]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #29491]	Cell length	3 µm

[Ref.: #29491]	Cell width	0.35 µm

[Ref.: #29491]	Cell shape	rod-shaped
[Ref.: #122634]	Cell shape	rod-shaped

[Ref.: #122634]	Motility	no

[Ref.: #29491]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42057]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #42057]

Culture medium growth

[Ref.: #42057]

Culture medium composition

expand / minimize

[Ref.: #122634]

Culture medium

CIP Medium 72

[Ref.: #122634]

Culture medium growth

[Ref.: #122634]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #29491]	growth	04-25 °C
[Ref.: #29491]	optimum	21.5 °C
[Ref.: #42057]	growth	20 °C
[Ref.: #67770]	growth	20 °C

[Ref.: #29491]	Temperature range	psychrophilic
[Ref.: #42057]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #29491]			optimum	7.25
[Ref.: #29491]			growth	6.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29491]	Oxygen tolerance	aerobe
[Ref.: #122634]	Oxygen tolerance	obligate aerobe

[Ref.: #29491]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29491]		NaCl		growth	<2	%
[Ref.: #29491]		NaCl		optimum	0.5	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29491]	esculin ChEBI	+	hydrolysis
[Ref.: #29491]	fructose ChEBI	+	carbon source
[Ref.: #29491]	glucose ChEBI	+	carbon source
[Ref.: #29491]	glutamate ChEBI	+	carbon source
[Ref.: #29491]	maltose ChEBI	+	carbon source
[Ref.: #29491]	mannose ChEBI	+	carbon source
[Ref.: #29491]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #122634]	nitrate ChEBI	-	reduction
[Ref.: #122634]	nitrite ChEBI	-	reduction
[Ref.: #29491]	sucrose ChEBI	+	carbon source
[Ref.: #29491]	tween 60 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #122634]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #29491]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #29491]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #29491]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29491]	catalase	+	1.11.1.6
[Ref.: #122634]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29491]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122634]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #122634]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122634]	12499	-	+	+	-	-	+	+	-	+	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	The China No. 1 glacier

[Ref.: #122634]	Sample type/isolated from	Environment, Frozen soil, glacier
[Ref.: #122634]	Geographic location (country and/or sea, region)	Xinjiang Uygur
[Ref.: #122634]	Country	China
[Ref.: #122634]	Country ISO 3 Code	CHN
[Ref.: #122634]	Continent	Asia
[Ref.: #122634]	Isolation date	2005
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #122634]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29491]	Flavobacterium sinopsychrotolerans strain 0533 16S ribosomal RNA gene, partial sequence	FJ654474	1378	GenBank	604089 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flavobacterium sinopsychrotolerans CGMCC 1.8704	GCA_900110375	scaffold	GenBank	604089 tax ID
[Ref.: #66792]	Flavobacterium sinopsychrotolerans strain CGMCC 1.8704	604089.3	wgs	PATRIC	604089 tax ID	*
[Ref.: #66792]	Flavobacterium sinopsychrotolerans CGMCC 1.8704	2619618873	draft	JGI IMG/M	604089 tax ID	*

[Ref.: #29491]	GC-content	32.5 mol%
[Ref.: #67770]	GC-content	32.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium sinopsychrotolerans CGMCC 1.8704 NCBI: GCA_900110375.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium sinopsychrotolerans strain CGMCC 1.8704 PATRIC: 604089.3
[Ref.: #69480]	gram-positive	no	98.853	yes
[Ref.: #69480]	anaerobic	no	99.273	no
[Ref.: #69480]	halophile	no	94.861	yes
[Ref.: #69480]	spore-forming	no	93.644	yes
[Ref.: #69480]	glucose-util	yes	88.106	no
[Ref.: #69480]	thermophile	no	99.555	yes
[Ref.: #69480]	flagellated	no	93.982	no
[Ref.: #69480]	aerobic	yes	93.917	yes
[Ref.: #69480]	motile	no	85.655	no
[Ref.: #69480]	glucose-ferment	no	93.828	no

Availability in culture collections External links

[Ref.: #29491]

Culture collection no.

CGMCC 1.8704, JCM 16398, CIP 110296

[Ref.: #91501]

SI-ID 376101

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium xueshanense sp. nov. and Flavobacterium urumqiense sp. nov., two psychrophilic bacteria isolated from glacier ice.	Dong K, Liu H, Zhang J, Zhou Y, Xin Y	Int J Syst Evol Microbiol	10.1099/ijs.0.030049-0	2011	*
Phylogeny	Flavobacterium sinopsychrotolerans sp. nov., isolated from a glacier.	Xu M, Xin Y, Tian J, Dong K, Yu Y, Zhang J, Liu H, Zhou Y	Int J Syst Evol Microbiol	10.1099/ijs.0.014126-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29491

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25891 (see below)

#42057 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91501

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID376101.1 )

#122634 Collection of Institut Pasteur ; Curators of the CIP; CIP 110296

#25891

IJSEM 20 2011 ( DOI 10.1099/ijs.0.014126-0 , PubMed 20118284 )

* These data were automatically processed and therefore are not curated

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Flavobacterium sinopsychrotolerans CGMCC 1.8704

Flavobacterium sinopsychrotolerans strain CGMCC 1.8704

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