Flavobacterium sinopsychrotolerans (CGMCC 1.8704, JCM 16398, 0533)

Name: Flavobacterium sinopsychrotolerans (CGMCC 1.8704, JCM 16398, 0533)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133555

Type strain

Strain Designation 0533, 533

Culture col. no. CGMCC 1.8704 JCM 16398 0533 CIP 110296 533

NCBI tax ID(s) 604089

Special Collections JCM Literature strains CIP

History CGMCC 1.8704 <-- M. Xu 0533. CIP <- 2011, CGMCC <- M. Xu: strain 0533

Links

Flavobacterium sinopsychrotolerans 0533 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from The China No. 1 glacier.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 376101

CGMCC 1.8704,JCM 16398,CIP 110296

@ref 20215

Last LPSN update 2026-02-09 11:31:58

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium sinopsychrotolerans

Full scientific name Flavobacterium sinopsychrotolerans Xu et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29491	negative	3 µm	0.35 µm	rod-shaped
125438					90.5
125438	negative				97
125439	negative				99.9
122634	negative			rod-shaped

Pigmentation

29491

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
42057	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122634	CIP Medium 72			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
29491	positive	growth	04-25
29491	positive	optimum	21.5	psychrophilic
42057	positive	growth	20	psychrophilic
67770	positive	growth	20	psychrophilic

Culture pH

@ref	Ability	Type	PH	PH range
29491	positive	optimum	7.25
29491	positive	growth	6.5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29491	aerobe
122634	obligate aerobe
125439	obligate aerobe	97.2

Spore formation

@ref	Spore formation	Confidence
29491
125438		90.627
125439		99.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29491	NaCl	positive	growth	<2 %
29491	NaCl	positive	optimum	0.5 %

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29491	4853 ChEBI	esculin	+	hydrolysis
29491	28757 ChEBI	fructose	+	carbon source
29491	17234 ChEBI	glucose	+	carbon source
29491	29987 ChEBI	glutamate	+	carbon source
29491	17306 ChEBI	maltose	+	carbon source
29491	37684 ChEBI	mannose	+	carbon source
29491	506227 ChEBI	N-acetylglucosamine	+	carbon source
122634	17632 ChEBI	nitrate	-	reduction
122634	16301 ChEBI	nitrite	-	reduction
29491	17992 ChEBI	sucrose	+	carbon source
29491	53425 ChEBI	tween 60	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122634	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
29491	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
29491	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
29491	alpha-galactosidase	+	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29491	catalase	+	1.11.1.6
122634	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
29491	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122634	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
122634	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122634	-	+	+	-	-	+	+	-	+	-	+	+	-	-	-	+	-	+	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
67770	The China No. 1 glacier
122634	Environment, Frozen soil, glacier	Xinjiang Uygur	China	CHN	Asia	2005

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
122634	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2619618873 annotated assembly for Flavobacterium sinopsychrotolerans CGMCC 1.8704	scaffold	GCA_900110375	604089.3	2619618873	604089	73.87

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29491	Flavobacterium sinopsychrotolerans strain 0533 16S ribosomal RNA gene, partial sequence	FJ654474	1378		604089

GC content

@ref	GC-content (mol%)	Method
29491	32.5
67770	32.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Flavobacterium sinopsychrotolerans CGMCC 1.8704
NCBI: GCA_900110375

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.20	no
125439	motility	BacteriaNetⓘ	no	76.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium sinopsychrotolerans strain CGMCC 1.8704
PATRIC: 604089.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	yes
125438	anaerobic	anaerobicⓘ	no	97.43	yes
125438	spore-forming	spore-formingⓘ	no	90.63	yes
125438	aerobic	aerobicⓘ	yes	85.83	no
125438	thermophilic	thermophileⓘ	no	98.42	yes
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium xueshanense sp. nov. and Flavobacterium urumqiense sp. nov., two psychrophilic bacteria isolated from glacier ice.	Dong K, Liu H, Zhang J, Zhou Y, Xin Y	Int J Syst Evol Microbiol	10.1099/ijs.0.030049-0	2011
Phylogeny	Flavobacterium sinopsychrotolerans sp. nov., isolated from a glacier.	Xu M, Xin Y, Tian J, Dong K, Yu Y, Zhang J, Liu H, Zhou Y	Int J Syst Evol Microbiol	10.1099/ijs.0.014126-0	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25891	IJSEM 20 2011 ( DOI 10.1099/ijs.0.014126-0 , PubMed 20118284 )
#29491	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25891
#42057	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#122634	Collection of Institut Pasteur ; Curators of the CIP; CIP 110296
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium sinopsychrotolerans (CGMCC 1.8704, JCM 16398, 0533)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900110375

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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