Name: Prevotella aurantiaca OMA31
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133542

Type strain:

Species: Prevotella aurantiaca

Strain Designation: OMA31

Culture col. no.: JCM 15754, CCUG 57723, KCTC 15073

Strain history: M. Sakamoto <-- M. Okamoto OMA31.

NCBI tax ID(s): 1236508 (strain), 596085 (species)

SI-ID 411214

CCUG 57723

Special Collections

Other strains from Prevotella aurantiaca

Section

Prevotella aurantiaca OMA31 is an anaerobe, rod-shaped bacterium that was isolated from human - mouth.

rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Prevotella*
	Species	**Prevotella aurantiaca**
	Full Scientific Name (LPSN)	Prevotella aurantiaca Sakamoto et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %95.163

[Ref.: #29422]	Cell length	1.6 µm

[Ref.: #29422]	Cell width	0.65 µm

[Ref.: #29422]	Cell shape	rod-shaped

[Ref.: #29422]	Motility	no

[Ref.: #61429]

Incubation period

2 days

[Ref.: #29422]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29422]	growth	37 °C
[Ref.: #61429]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29422]	Oxygen tolerance	anaerobe
[Ref.: #61429]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %93.039

[Ref.: #29422]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %91.356
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29422]	glucose ChEBI	+	carbon source
[Ref.: #29422]	maltose ChEBI	+	carbon source
[Ref.: #29422]	mannose ChEBI	+	carbon source
[Ref.: #29422]	raffinose ChEBI	+	carbon source
[Ref.: #29422]	sucrose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #29422]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29422]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29422]		alkaline phosphatase	+	3.1.3.1
[Ref.: #29422]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29422]	Sample type/isolated from	human - mouth

[Ref.: #61429]	Sample type/isolated from	Periodontal pocket,periodontitis
[Ref.: #61429]	Country	Japan
[Ref.: #61429]	Country ISO 3 Code	JPN
[Ref.: #61429]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human oral cavity
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Mouth

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB480534 (>99% sequence identity) for Prevotella aurantiaca subclade from Microbeatlas

Aquatic Samples	139
Soil Samples	67
Animal Samples	11479
Plant Samples	103
Total Samples	11788

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29422]	Prevotella aurantiaca gene for 16S ribosomal RNA, partial sequence	AB480534	1481	GenBank ENA	1236508 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella aurantiaca JCM 15754	GCA_000614025	contig	GenBank ENA	1236508 tax ID
[Ref.: #66792]	Prevotella aurantiaca JCM 15754	1236508.3	wgs	PATRIC	1236508 tax ID	*
[Ref.: #66792]	Prevotella aurantiaca JCM 15754	2565956594	draft	JGI IMG/M	1236508 tax ID	*

[Ref.: #29422]	GC-content	39.7 mol%
[Ref.: #67770]	GC-content	39.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prevotella aurantiaca JCM 15754 PATRIC: 1236508.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella aurantiaca JCM 15754 PATRIC: 1236508.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.163	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	93.039	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.356	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.341	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.234	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.5	no

Availability in culture collections External links

[Ref.: #29422]

Culture collection no.

JCM 15754, CCUG 57723, KCTC 15073

[Ref.: #91495]

SI-ID 411214

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Dipeptidyl peptidase IV and quorum sensing signaling in biofilm-related virulence of Prevotella aurantiaca.	Fteita D, Musrati AA, Kononen E, Ma X, Gursoy M, Peurla M, Soderling E, Sintim HO, Gursoy UK	Anaerobe	10.1016/j.anaerobe.2017.08.009	2017	*
Phylogeny	Prevotella aurantiaca sp. nov., isolated from the human oral cavity.	Sakamoto M, Suzuki N, Okamoto M	Int J Syst Evol Microbiol	10.1099/ijs.0.012831-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29422

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25828 (see below)

#61429 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57723

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91495

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID411214.1 )

#25828

IJSEM 500 2010 ( DOI 10.1099/ijs.0.012831-0 , PubMed 19654360 )

* These data were automatically processed and therefore are not curated

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Prevotella aurantiaca JCM 15754

Prevotella aurantiaca JCM 15754

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