Name: Wandonia haliotis Haldis-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133540

Type strain:

Species: Wandonia haliotis

Strain Designation: Haldis-1

Culture col. no.: KCTC 22610, NBRC 105642, JCM 16083

Strain history: <- HI Kang, Sunchon Univ., Korea

NCBI tax ID(s): 1223530 (strain), 574963 (species)

Section

Wandonia haliotis Haldis-1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Isolated from abalone.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Crocinitomicaceae*
	Genus	*Wandonia*
	Species	**Wandonia haliotis**
	Full Scientific Name (LPSN)	Wandonia haliotis Lee et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29414]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #29414]	Cell length	3.5 µm

[Ref.: #29414]	Cell width	0.25 µm

[Ref.: #29414]	Cell shape	rod-shaped

[Ref.: #29414]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29414]	growth	25-42 °C
[Ref.: #29414]	optimum	33.5 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	30-37 °C

[Ref.: #29414]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29414]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #67771]	Observation	quinones: MK-7

	Enzyme	Enzyme activity	EC number
[Ref.: #29414]	acid phosphatase	+	3.1.3.2
[Ref.: #29414]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29414]	catalase	+	1.11.1.6
[Ref.: #29414]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29414]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29414]	Sample type/isolated from	Isolated from abalone

[Ref.: #67770]	Sample type/isolated from	Abalone (Haliotis discus) under aquaculture in seawater off the Wando coast
[Ref.: #67770]	Host species	Haliotis discus
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From abalone, `Haliotis discus`
[Ref.: #67771]	Geographic location (country and/or sea, region)	Wando
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ424814 (>99% sequence identity) for Wandonia haliotis subclade from Microbeatlas

Aquatic Samples	1275
Soil Samples	84
Animal Samples	237
Plant Samples	25
Total Samples	1621

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29414]	Wandonia haliotis strain Haldis-1 16S ribosomal RNA gene, partial sequence	FJ424814	1485	GenBank	1223530 tax ID

[Ref.: #67770]	GC-content	38.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	38.1 mol%

Availability in culture collections External links

[Ref.: #29414]

Culture collection no.

KCTC 22610, NBRC 105642, JCM 16083

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fluviicola hefeinensis sp. nov., isolated from the wastewater of a chemical factory.	Yang HX, Wang X, Liu XW, Zhang J, Yang GQ, Lau KWK, Li SP, Jiang JD	Int J Syst Evol Microbiol	10.1099/ijs.0.056705-0	2013	*
Phylogeny	Wandonia haliotis gen. nov., sp. nov., a marine bacterium of the family Cryomorphaceae, phylum Bacteroidetes.	Lee DH, Choi EK, Moon SR, Ahn S, Lee YS, Jung JS, Jeon CO, Whang KS, Kahng HY	Int J Syst Evol Microbiol	10.1099/ijs.0.012674-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29414

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25821 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#25821

IJSEM 510 2010 ( DOI 10.1099/ijs.0.012674-0 , PubMed 19654361 )

* These data were automatically processed and therefore are not curated

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