Name: Ensifer garamanticus LMG 24692
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133536

Type strain:

Species: Ensifer garamanticus

Culture col. no.: LMG 24692, CIP 109916, ORS 1400

Strain history: CIP <- 2008, P. de Lajudie, Lab. Symbioses Tropicales et Méditerranéennes, UMR 113 IRD-CIRAD-SupAgro-Université Montpellier, Montpellier, France: strain ORS 1400

NCBI tax ID(s): 680247 (species)

SI-ID 368955

CIP 109916, LMG 24692

Other strains from Ensifer garamanticus

E. garamanticus CIP 109848, LMG 24693, ORS 1401
E. garamanticus CIP 109849, LMG 24694, STM 354

Section

Ensifer garamanticus LMG 24692 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Plant, Root nodule, Argyrolobium uniflorum.

Gram-negative
rod-shaped
aerobe
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Ensifer*
	Species	**Ensifer garamanticus**
	Full Scientific Name (LPSN)	Ensifer garamanticus Merabet et al. 2010

Synonym

Sinorhizobium garamanticum

Information on morphological and physiological properties Morphology

[Ref.: #29389]	Gram stain	negative
[Ref.: #119535]	Gram stain	negative

[Ref.: #29389]	Cell shape	rod-shaped
[Ref.: #119535]	Cell shape	rod-shaped

[Ref.: #119535]	Motility	yes

[Ref.: #29389]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37881]

Culture medium

MEDIUM 705 - for Ensifer

[Ref.: #37881]

Culture medium growth

[Ref.: #37881]

Culture medium composition

expand / minimize

[Ref.: #119535]

Culture medium

CIP Medium 705

[Ref.: #119535]

Culture medium growth

[Ref.: #119535]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #29389]			growth	28-40 °C
[Ref.: #37881]			growth	30 °C

[Ref.: #37881]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #29389]			growth	07-12

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29389]	Oxygen tolerance	aerobe
[Ref.: #119535]	Oxygen tolerance	obligate aerobe

[Ref.: #29389]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29389]		NaCl		growth	01-04	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29389]	malonate ChEBI	+	carbon source
[Ref.: #119535]	nitrate ChEBI	+	reduction
[Ref.: #119535]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #119535]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119535]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119535]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #119535]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119535]	12216	-	+	-	-	-	+	+	+	+	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #119535]	Sample type/isolated from	Plant, Root nodule, Argyrolobium uniflorum
[Ref.: #119535]	Geographic location (country and/or sea, region)	South
[Ref.: #119535]	Country	Tunisia
[Ref.: #119535]	Country ISO 3 Code	TUN
[Ref.: #119535]	Continent	Africa
[Ref.: #119535]	Isolation date	1993
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #119535]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

[Ref.: #29389]

GC-content

62.4 mol%

Availability in culture collections External links

[Ref.: #29389]

Culture collection no.

LMG 24692, CIP 109916, ORS 1400

[Ref.: #91492]

SI-ID 368955

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Multilocus sequence analysis of root nodule isolates from Lotus arabicus (Senegal), Lotus creticus, Argyrolobium uniflorum and Medicago sativa (Tunisia) and description of Ensifer numidicus sp. nov. and Ensifer garamanticus sp. nov.	Merabet C, Martens M, Mahdhi M, Zakhia F, Sy A, Le Roux C, Domergue O, Coopman R, Bekki A, Mars M, Willems A, de Lajudie P	Int J Syst Evol Microbiol	10.1099/ijs.0.012088-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29389

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25796 (see below)

#37881 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#91492

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID368955.1 )

#119535 Collection of Institut Pasteur ; Curators of the CIP; CIP 109916

#25796

IJSEM 664 2010 ( DOI 10.1099/ijs.0.012088-0 , PubMed 19656922 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Ensifer garamanticus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF