Name: Acidocella aluminiidurans AL46
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133532

Type strain:

Species: Acidocella aluminiidurans

Strain Designation: AL46

Culture col. no.: NBRC 104303, DSM 108313, VTCC D9-1

Strain history: <- K. Mori, NBRC; NBRC 104303 <- N. Bao Ve and T. Aizawa, Can Tho University, Vietnam; AL46

NCBI tax ID(s): 472056 (species)

SI-ID 404595

DSM 108313

Section

Acidocella aluminiidurans AL46 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Waterweed from highly acidic swamp.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acidocella*
	Species	**Acidocella aluminiidurans**
	Full Scientific Name (LPSN)	Acidocella aluminiidurans Kimoto et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29361]	Gram stain	negative

[Ref.: #29361]	Cell length	1.4 µm

[Ref.: #29361]	Cell width	0.3 µm

[Ref.: #29361]	Cell shape	rod-shaped

[Ref.: #29361]	Motility	no

[Ref.: #29361]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64731]

Culture medium

ACIDIPHILIUM MEDIUM (DSMZ Medium 269)

[Ref.: #64731]

Culture medium growth

[Ref.: #64731]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64731]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #29361]			growth	17-42 °C
[Ref.: #64731]			growth	28 °C

[Ref.: #64731]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #29361]			optimum	4.5
[Ref.: #29361]			growth	03-07

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29361]

Oxygen tolerance

aerobe

[Ref.: #29361]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29361]	alanine ChEBI	+	carbon source
[Ref.: #29361]	dextrin ChEBI	+	carbon source
[Ref.: #29361]	glutamate ChEBI	+	carbon source
[Ref.: #29361]	glycogen ChEBI	+	carbon source
[Ref.: #29361]	succinate ChEBI	+	carbon source
[Ref.: #29361]	urocanic acid ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity
[Ref.: #29361]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29361]	Sample type/isolated from	Waterweed from highly acidic swamp

[Ref.: #64731]	Sample type/isolated from	Torpedo grass, Panicum repens
[Ref.: #64731]	Geographic location (country and/or sea, region)	Can Tho
[Ref.: #64731]	Country	Vietnam
[Ref.: #64731]	Country ISO 3 Code	VNM
[Ref.: #64731]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Wetland (Swamp)
#Host	#Plants	#Aquatic plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB362219 (>99% sequence identity) for Acidocella from Microbeatlas

Aquatic Samples	558
Soil Samples	285
Animal Samples	371
Plant Samples	227
Total Samples	1441

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64731]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29361]	Acidocella aluminiidurans gene for 16S rRNA, partial sequence	AB362219	1474	GenBank	472056 tax ID
[Ref.: #64731]	Acidocella aluminiidurans gene for 16S rRNA, partial sequence, strain: NBRC 104303	AB682174	1410	ENA	472056 tax ID

[Ref.: #64731]

GC-content

65.6 mol%

Availability in culture collections External links

[Ref.: #64731]

Culture collection no.

NBRC 104303, DSM 108313, VTCC D9-1

[Ref.: #91490]

SI-ID 404595

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidocella aluminiidurans sp. nov., an aluminium-tolerant bacterium isolated from Panicum repens grown in a highly acidic swamp in actual acid sulfate soil area of Vietnam.	Kimoto KI, Aizawa T, Urai M, Bao Ve N, Suzuki KI, Nakajima M, Sunairi M	Int J Syst Evol Microbiol	10.1099/ijs.0.011569-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29361

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25772 (see below)

#64731

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108313

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91490

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404595.1 )

#25772

IJSEM 764 2010 ( DOI 10.1099/ijs.0.011569-0 , PubMed 19656936 )

* These data were automatically processed and therefore are not curated

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