Acidocella aluminiidurans (NBRC 104303, DSM 108313, VTCC D9-1)

Name: Acidocella aluminiidurans (NBRC 104303, DSM 108313, VTCC D9-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133532

Type strain

Strain Designation AL46, VTCC-D9-1

Culture col. no. NBRC 104303 DSM 108313 VTCC D9-1 AL46 VTCC-D9-1

NCBI tax ID(s) 472056

Special Collections DSMZ Literature strains

History <- K. Mori, NBRC; NBRC 104303 <- N. Bao Ve and T. Aizawa, Can Tho University, Vietnam; AL46

Links

Acidocella aluminiidurans AL46 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from Waterweed from highly acidic swamp.

Gram-negative rod-shaped aerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 404595

NBRC 104303,DSM 108313

@ref 20215

Last LPSN update 2026-02-09 11:31:58

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Acidocella

Species Acidocella aluminiidurans

Full scientific name Acidocella aluminiidurans Kimoto et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29361	negative	1.4 µm	0.3 µm	rod-shaped

Pigmentation

29361

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64731	ACIDIPHILIUM MEDIUM (DSMZ Medium 269)		Medium recipe at MediaDive	Name: ACIDIPHILIUM MEDIUM (DSMZ Medium 269; with strain-specific modifications) Composition: (NH4)2SO4 2.0 g/l D-Glucose 1.0 g/l Trypticase soy broth 1.0 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Yeast extract 0.3 g/l KCl 0.1 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
29361	positive	growth	17-42
64731	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29361	positive	optimum	4.5
29361	positive	growth	03-07	acidophile

Physiology and metabolism

Oxygen tolerance

29361

Oxygen toleranceaerobe

Spore formation

29361

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29361	16449 ChEBI	alanine	+	carbon source
29361	23652 ChEBI	dextrin	+	carbon source
29361	29987 ChEBI	glutamate	+	carbon source
29361	28087 ChEBI	glycogen	+	carbon source
29361	30031 ChEBI	succinate	+	carbon source
29361	27248 ChEBI	urocanic acid	+	carbon source

Enzymes

@ref	Value	Activity
29361	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Wetland (Swamp)
#Host	#Plants	#Aquatic plant

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
29361	Waterweed from highly acidic swamp
64731	Torpedo grass, Panicum repens	Can Tho	Vietnam	VNM	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB362219 (>99% sequence identity) for Acidocella from Microbeatlas

Aquatic Samples	558
Soil Samples	285
Animal Samples	371
Plant Samples	227
Total Samples	1441

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64731	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29361	Acidocella aluminiidurans gene for 16S rRNA, partial sequence	AB362219	1474		472056
64731	Acidocella aluminiidurans gene for 16S rRNA, partial sequence, strain: NBRC 104303	AB682174	1410		472056

GC content

64731

GC-content (mol%)65.6

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacterial Populations in International Artisanal Kefirs.	Sindi A, Badsha MB, Unlu G.	Microorganisms	10.3390/microorganisms8091318	2020
	Analysis of Leaf and Soil Nutrients, Microorganisms and Metabolome in the Growth Period of Idesia polycarpa Maxim.	Zhang T, Wang S, Rana S, Wang Y, Liu Z, Cai Q, Geng X, Yuan Q, Yang Y, Miao C, Xue X, Dai L, Li Z.	Microorganisms	10.3390/microorganisms12040746	2024
	Evolution of microbial "streamer" growths in an acidic, metal-contaminated stream draining an abandoned underground copper mine.	Kay CM, Rowe OF, Rocchetti L, Coupland K, Hallberg KB, Johnson DB.	Life (Basel)	10.3390/life3010189	2013
Phylogeny	Acidocella aluminiidurans sp. nov., an aluminium-tolerant bacterium isolated from Panicum repens grown in a highly acidic swamp in actual acid sulfate soil area of Vietnam.	Kimoto KI, Aizawa T, Urai M, Bao Ve N, Suzuki KI, Nakajima M, Sunairi M	Int J Syst Evol Microbiol	10.1099/ijs.0.011569-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25772	IJSEM 764 2010 ( DOI 10.1099/ijs.0.011569-0 , PubMed 19656936 )
#29361	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25772
#64731	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108313
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acidocella aluminiidurans (NBRC 104303, DSM 108313, VTCC D9-1)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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