Psychrobacter piscatorii (JCM 15603, NCIMB 14510, T-3-2)

Name: Psychrobacter piscatorii (JCM 15603, NCIMB 14510, T-3-2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133525

Type strain

Strain Designation T-3-2

Culture col. no. JCM 15603 NCIMB 14510 T-3-2 CIP 110995

NCBI tax ID(s) 554343

Special Collections JCM CIP Literature strains

History JCM <-- I. Yumoto T-3-2. CIP <- 2016, JCM <- 2008, I. Yumoto, Hokaido Univ., Sapporo, Japan: strain T-3-2

Links

Psychrobacter piscatorii T-3-2 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from Drain of a fish-processing plant.

Gram-negative ovoid-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 413152

JCM 15603,NCIMB 14510,CIP 110995

@ref 20215

Last LPSN update 2026-05-29 08:38:06

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Psychrobacter

Species Psychrobacter piscatorii

Full scientific name Psychrobacter piscatorii Yumoto et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29328	negative	1.45 µm	1 µm	ovoid-shaped
125439	negative				99.079
121839	negative			rod-shaped

Pigmentation

29328

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
41742	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121839	CIP Medium 72			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
29328	positive	growth	0-30
29328	positive	optimum	25
41742	positive	growth	25
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29328	aerobe
125439	obligate aerobe	99.591

Spore formation

@ref	Spore formation	Confidence
29328
125439		99.955

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29328	NaCl	positive	growth	0-12 %

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29328	30089 ChEBI	acetate	+	carbon source
29328	22599 ChEBI	arabinose	+	carbon source
29328	25115 ChEBI	malate	+	carbon source
29328	15361 ChEBI	pyruvate	+	carbon source
29328	30031 ChEBI	succinate	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29328	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
29328	catalase	+	1.11.1.6
29328	cytochrome oxidase	+	1.9.3.1
29328	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Drain of a fish-processing plant
121839	Drain of a fish-processing plant	Hokkaido	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
121839	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952327v1 assembly for Psychrobacter piscatorii JCM 15603	scaffold	GCA_039523275	554343	56.93

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29328	Psychrobacter piscatorii gene for 16S rRNA, partial sequence	AB453700	1510		554343

GC content

@ref	GC-content (mol%)	Method
29328	43.9
67770	43.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3952327v1 assembly for Psychrobacter piscatorii JCM 15603
NCBI: GCA_039523275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	99.08	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.59	no
125439	motility	BacteriaNetⓘ	yes	79.40	no
125439	spore_formation	BacteriaNetⓘ	no	99.96	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter piscatorii sp. nov., a psychrotolerant bacterium exhibiting high catalase activity isolated from an oxidative environment.	Yumoto I, Hirota K, Kimoto H, Nodasaka Y, Matsuyama H, Yoshimune K	Int J Syst Evol Microbiol	10.1099/ijs.0.010959-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25740	IJSEM 205 2010 ( DOI 10.1099/ijs.0.010959-0 , PubMed 19648327 )
#29328	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25740
#41742	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#121839	Collection of Institut Pasteur ; Curators of the CIP; CIP 110995
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Psychrobacter piscatorii (JCM 15603, NCIMB 14510, T-3-2)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039523275

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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