Name: Psychrobacter piscatorii T-3-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133525

Type strain:

Species: Psychrobacter piscatorii

Strain Designation: T-3-2

Culture col. no.: JCM 15603, NCIMB 14510, CIP 110995

Strain history: CIP <- 2016, JCM <- 2008, I. Yumoto, Hokaido Univ., Sapporo, Japan: strain T-3-2

NCBI tax ID(s): 554343 (species)

SI-ID 413152

CIP 110995

Section

Psychrobacter piscatorii T-3-2 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from Drain of a fish-processing plant.

Gram-negative
ovoid-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Species	**Psychrobacter piscatorii**
	Full Scientific Name (LPSN)	Psychrobacter piscatorii Yumoto et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29328]	Gram stain	negative
[Ref.: #121839]	Gram stain	negative

[Ref.: #29328]	Cell length	1.45 µm

[Ref.: #29328]	Cell width	1 µm

[Ref.: #29328]	Cell shape	ovoid-shaped
[Ref.: #121839]	Cell shape	rod-shaped

[Ref.: #29328]	Motility	no
[Ref.: #121839]	Motility	no

[Ref.: #29328]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41742]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41742]

Culture medium growth

[Ref.: #41742]

Culture medium composition

expand / minimize

[Ref.: #121839]

Culture medium

CIP Medium 72

[Ref.: #121839]

Culture medium growth

[Ref.: #121839]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #29328]	growth	0-30 °C
[Ref.: #29328]	optimum	25 °C
[Ref.: #41742]	growth	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #29328]	Temperature range	mesophilic
[Ref.: #41742]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29328]

Oxygen tolerance

aerobe

[Ref.: #29328]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29328]		NaCl		growth	0-12	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29328]	acetate ChEBI	+	carbon source
[Ref.: #29328]	arabinose ChEBI	+	carbon source
[Ref.: #29328]	malate ChEBI	+	carbon source
[Ref.: #29328]	pyruvate ChEBI	+	carbon source
[Ref.: #29328]	succinate ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #29328]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #29328]	catalase	+	1.11.1.6
[Ref.: #29328]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29328]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Drain of a fish-processing plant

[Ref.: #121839]	Sample type/isolated from	Drain of a fish-processing plant
[Ref.: #121839]	Geographic location (country and/or sea, region)	Hokkaido
[Ref.: #121839]	Country	Japan
[Ref.: #121839]	Country ISO 3 Code	JPN
[Ref.: #121839]	Continent	Asia
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #121839]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29328]	Psychrobacter piscatorii gene for 16S rRNA, partial sequence	AB453700	1510	GenBank	554343 tax ID

[Ref.: #29328]	GC-content	43.9 mol%
[Ref.: #67770]	GC-content	43.9 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #29328]

Culture collection no.

JCM 15603, NCIMB 14510, CIP 110995

[Ref.: #91487]

SI-ID 413152

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter piscatorii sp. nov., a psychrotolerant bacterium exhibiting high catalase activity isolated from an oxidative environment.	Yumoto I, Hirota K, Kimoto H, Nodasaka Y, Matsuyama H, Yoshimune K	Int J Syst Evol Microbiol	10.1099/ijs.0.010959-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29328

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25740 (see below)

#41742 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#91487

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID413152.1 )

#121839 Collection of Institut Pasteur ; Curators of the CIP; CIP 110995

#25740

IJSEM 205 2010 ( DOI 10.1099/ijs.0.010959-0 , PubMed 19648327 )

* These data were automatically processed and therefore are not curated

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