Name: Cobetia crustatorum JO1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133504

Type strain:

Species: Cobetia crustatorum

Strain Designation: JO1

Culture col. no.: KCTC 22486, JCM 15644, NRIC 0824

Strain history: <- JW Bae, KRIBB

NCBI tax ID(s): 553385 (species)

Section

Cobetia crustatorum JO1 is an aerobe, Gram-negative, motile bacterium that was isolated from Fermented seafood.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Cobetia*
	Species	**Cobetia crustatorum**
	Full Scientific Name (LPSN)	Cobetia crustatorum Kim et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29219]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #29219]	Cell length	1.05 µm

[Ref.: #29219]	Cell width	0.6 µm

[Ref.: #29219]	Cell shape	rod-shaped

[Ref.: #29219]	Motility	yes

[Ref.: #29219]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29219]	growth	04-30 °C
[Ref.: #29219]	optimum	25 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #29219]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29219]			optimum	5.5
[Ref.: #29219]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29219]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29219]		NaCl		growth	3.5-11.5	%
[Ref.: #29219]		NaCl		optimum	6.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29219]	alanine ChEBI	+	carbon source
[Ref.: #29219]	arabinose ChEBI	+	carbon source
[Ref.: #29219]	asparagine ChEBI	+	carbon source
[Ref.: #29219]	citrate ChEBI	+	carbon source
[Ref.: #29219]	fructose ChEBI	+	carbon source
[Ref.: #29219]	galactose ChEBI	+	carbon source
[Ref.: #29219]	gluconate ChEBI	+	carbon source
[Ref.: #29219]	glucose ChEBI	+	carbon source
[Ref.: #29219]	glutamate ChEBI	+	carbon source
[Ref.: #29219]	glycerol ChEBI	+	carbon source
[Ref.: #29219]	lactate ChEBI	+	carbon source
[Ref.: #29219]	maltose ChEBI	+	carbon source
[Ref.: #29219]	mannitol ChEBI	+	carbon source
[Ref.: #29219]	mannose ChEBI	+	carbon source
[Ref.: #29219]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29219]	proline ChEBI	+	carbon source
[Ref.: #29219]	serine ChEBI	+	carbon source
[Ref.: #29219]	sucrose ChEBI	+	carbon source
[Ref.: #29219]	trehalose ChEBI	+	carbon source
[Ref.: #29219]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29219]	acid phosphatase	+	3.1.3.2
[Ref.: #29219]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29219]	catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29219]	Sample type/isolated from	Fermented seafood

[Ref.: #67770]	Sample type/isolated from	Jeotgal, traditional Korean fermented seafood
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From jogae jeotgal
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU909460 (>99% sequence identity) for Cobetia crustatorum from Microbeatlas

Aquatic Samples	1196
Soil Samples	58
Animal Samples	321
Plant Samples	23
Total Samples	1598

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29219]	Cobetia crustatorum strain JO1 16S ribosomal RNA gene, partial sequence	EU909460	1427	GenBank	553385 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cobetia crustatorum JO1	GCA_000591415	contig	GenBank	553385 tax ID
[Ref.: #66792]	Cobetia crustatorum JO1	2568526450	draft	JGI IMG/M	553385 tax ID	*

[Ref.: #29219]	GC-content	61.4 mol%
[Ref.: #67770]	GC-content	61.4 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #29219]

Culture collection no.

KCTC 22486, JCM 15644, NRIC 0824

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Cobetia amphilecti sp. nov., Cobetia litoralis sp. nov. and Cobetia pacifica sp. nov., classification of Halomonas halodurans as a later heterotypic synonym of Cobetia marina and emended descriptions of the genus Cobetia and Cobetia marina.	Romanenko LA, Tanaka N, Svetashev VI, Falsen E	Int J Syst Evol Microbiol	10.1099/ijs.0.036863-0	2012	*
Phylogeny	Cobetia crustatorum sp. nov., a novel slightly halophilic bacterium isolated from traditional fermented seafood in Korea.	Kim MS, Roh SW, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.008847-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29219

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25640 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#25640

IJSEM 620 2010 ( DOI 10.1099/ijs.0.008847-0 , PubMed 19654339 )

* These data were automatically processed and therefore are not curated

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