Cobetia crustatorum (KCTC 22486, JCM 15644, JO1)

Name: Cobetia crustatorum (KCTC 22486, JCM 15644, JO1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133504

Type strain

Strain Designation JO1

Culture col. no. KCTC 22486 JCM 15644 JO1 NRIC 0824

NCBI tax ID(s) 553385

Special Collections JCM KCTC Literature strains

History J.-W. Bae JO1. <- JW Bae, KRIBB

Links

Cobetia crustatorum JO1 is an aerobe, Gram-negative, motile prokaryote that was isolated from Fermented seafood.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 25448

KCTC 22486,JCM 15644

@ref 20215

Last LPSN update 2026-02-09 11:31:57

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Cobetia

Species Cobetia crustatorum

Full scientific name Cobetia crustatorum Kim et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29219	negative	1.05 µm	0.6 µm	rod-shaped
67771	negative
125439	negative				99.8
125439					93

Pigmentation

29219

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
29219	positive	growth	04-30
29219	positive	optimum	25	mesophilic
67770	positive	growth	25	mesophilic
67771	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29219	positive	optimum	5.5
29219	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29219	aerobe
67771	aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29219	NaCl	positive	growth	3.5-11.5 %
29219	NaCl	positive	optimum	6.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29219	16449 ChEBI	alanine	+	carbon source
29219	22599 ChEBI	arabinose	+	carbon source
29219	22653 ChEBI	asparagine	+	carbon source
29219	16947 ChEBI	citrate	+	carbon source
29219	28757 ChEBI	fructose	+	carbon source
29219	28260 ChEBI	galactose	+	carbon source
29219	24265 ChEBI	gluconate	+	carbon source
29219	17234 ChEBI	glucose	+	carbon source
29219	29987 ChEBI	glutamate	+	carbon source
29219	17754 ChEBI	glycerol	+	carbon source
29219	24996 ChEBI	lactate	+	carbon source
29219	17306 ChEBI	maltose	+	carbon source
29219	29864 ChEBI	mannitol	+	carbon source
29219	37684 ChEBI	mannose	+	carbon source
29219	51850 ChEBI	methyl pyruvate	+	carbon source
29219	26271 ChEBI	proline	+	carbon source
29219	17822 ChEBI	serine	+	carbon source
29219	17992 ChEBI	sucrose	+	carbon source
29219	27082 ChEBI	trehalose	+	carbon source
29219	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29219	acid phosphatase	+	3.1.3.2
29219	alkaline phosphatase	+	3.1.3.1
29219	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
29219	Fermented seafood
67770	Jeotgal, traditional Korean fermented seafood	Republic of Korea	KOR	Asia
67771	From jogae jeotgal	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU909460 (>99% sequence identity) for Cobetia crustatorum from Microbeatlas

Aquatic Samples	1196
Soil Samples	58
Animal Samples	321
Plant Samples	23
Total Samples	1598

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	Draft genome of Cobetia crustatorum JO1 assembly for Cobetia crustatorum JO1	contig	GCA_000591415	553385.4	2568526450	553385	46.82

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29219	Cobetia crustatorum strain JO1 16S ribosomal RNA gene, partial sequence	EU909460	1427		553385

GC content

@ref	GC-content (mol%)	Method
29219	61.4
67770	61.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cobetia crustatorum JO1
NCBI: GCA_000591415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	93.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	80.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Cobetia amphilecti sp. nov., Cobetia litoralis sp. nov. and Cobetia pacifica sp. nov., classification of Halomonas halodurans as a later heterotypic synonym of Cobetia marina and emended descriptions of the genus Cobetia and Cobetia marina.	Romanenko LA, Tanaka N, Svetashev VI, Falsen E	Int J Syst Evol Microbiol	10.1099/ijs.0.036863-0	2012
Phylogeny	Cobetia crustatorum sp. nov., a novel slightly halophilic bacterium isolated from traditional fermented seafood in Korea.	Kim MS, Roh SW, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.008847-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25640	IJSEM 620 2010 ( DOI 10.1099/ijs.0.008847-0 , PubMed 19654339 )
#29219	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25640
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cobetia crustatorum (KCTC 22486, JCM 15644, JO1)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000591415

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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