Name: Winogradskyella rapida SCB36
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133495

Type strain:

Species: Winogradskyella rapida

Strain Designation: SCB36

Culture col. no.: CECT 7392, CCUG 56098

NCBI tax ID(s): 549701 (species)

SI-ID 364205

CCUG 56098, CECT 7392

Section

Winogradskyella rapida SCB36 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Winogradskyella*
	Species	**Winogradskyella rapida**
	Full Scientific Name (LPSN)	Winogradskyella rapida Pinhassi et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29196]	Gram stain	negative

[Ref.: #29196]	Cell length	0.8-1.8 µm

[Ref.: #29196]	Cell width	0.3-0.4 µm

[Ref.: #29196]	Cell shape	rod-shaped

[Ref.: #29196]	Motility	yes

[Ref.: #29196]	Flagellum arrangement	gliding

[Ref.: #60858]

Incubation period

1 day

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29196]	growth	4-36 °C
[Ref.: #29196]	optimum	24 °C
[Ref.: #60858]	growth	20-30 °C

[Ref.: #29196]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29196]	Oxygen tolerance	aerobe
[Ref.: #60858]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29196]		NaCl		growth	1-8	%
[Ref.: #29196]		NaCl		optimum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29196]	fructose ChEBI	+	carbon source
[Ref.: #29196]	glucose ChEBI	+	carbon source
[Ref.: #29196]	glycerol ChEBI	+	carbon source
[Ref.: #29196]	maltose ChEBI	+	carbon source
[Ref.: #29196]	mannitol ChEBI	+	carbon source
[Ref.: #29196]	mannose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #29196]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #29196]	acid phosphatase	+	3.1.3.2
[Ref.: #29196]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29196]	catalase	+	1.11.1.6
[Ref.: #29196]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29196]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29196]	Sample type/isolated from	seawater

[Ref.: #60858]	Sample type/isolated from	Seawater surface,enrichment with protein
[Ref.: #60858]	Sampling date	1995
[Ref.: #60858]	Geographic location (country and/or sea, region)	CA,Southern California Bight
[Ref.: #60858]	Country	USA
[Ref.: #60858]	Country ISO 3 Code	USA
[Ref.: #60858]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U64013 (>99% sequence identity) for Winogradskyella from Microbeatlas

Aquatic Samples	23
Soil Samples	33
Animal Samples	8
Plant Samples
Total Samples	64

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29196]	Winogradskyella rapida strain SCB36 16S ribosomal RNA gene, partial sequence	U64013	1478	GenBank	549701 tax ID

[Ref.: #29196]

GC-content

36.3 mol%

Availability in culture collections External links

[Ref.: #29196]

Culture collection no.

CECT 7392, CCUG 56098

[Ref.: #91469]

SI-ID 364205

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Winogradskyella damuponensis sp. nov., isolated from seawater.	Lee DH, Cho SJ, Kim SM, Lee SB	Int J Syst Evol Microbiol	10.1099/ijs.0.041384-0	2012	*
Phylogeny	Winogradskyella rapida sp. nov., isolated from protein-enriched seawater.	Pinhassi J, Nedashkovskaya OI, Hagstrom A, Vancanneyt M	Int J Syst Evol Microbiol	10.1099/ijs.0.008334-0	2009	*
Phylogeny	Winogradskyella sediminis sp. nov., isolated from marine sediment.	Zhang DC, Liu YX, Huang HJ, Weber K, Margesin R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001157	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29196

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25619 (see below)

#60858 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56098

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91469

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364205.1 )

#25619

IJSEM 2180 2009 ( DOI 10.1099/ijs.0.008334-0 , PubMed 19605730 )

* These data were automatically processed and therefore are not curated

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