Name: Flavobacterium tiangeerense 0563
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133486

Type strain:

Species: Flavobacterium tiangeerense

Strain Designation: 0563

Culture col. no.: CGMCC 1.6847, JCM 15087, CIP 110391

Strain history: D.-C. Zhang and Y.-G. Zhou 0563.

NCBI tax ID(s): 459471 (species)

Section

Flavobacterium tiangeerense 0563 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from China No.1 glacier .

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium tiangeerense**
	Full Scientific Name (PNU)	Flavobacterium tiangeerense Xin et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29172]	Gram stain	negative
[Ref.: #29172]	Cell length	5.5 µm
[Ref.: #29172]	Cell width	0.45 µm
[Ref.: #29172]	Cell shape	rod-shaped
[Ref.: #29172]	Motility	no

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #29172]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #33354]

Culture medium

MEDIUM691 - for Flavobacterium glaciei

[Ref.: #33354]

Culture medium growth

		Temperature
[Ref.: #29172]	growth	04-26 °C
[Ref.: #29172]	optimum	22.5 °C
[Ref.: #33354]	growth	18 °C
[Ref.: #67770]	growth	18 °C

[Ref.: #29172]	Temperature range	psychrophilic
[Ref.: #33354]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #29172]			optimum	7.5
[Ref.: #29172]			growth	6.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29172]

Oxygen tolerance

aerobe

[Ref.: #29172]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29172]		NaCl		growth	0-0.5	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29172]	alanine ChEBI	+	carbon source
[Ref.: #29172]	cellobiose ChEBI	+	carbon source
[Ref.: #29172]	dextrin ChEBI	+	carbon source
[Ref.: #29172]	esculin ChEBI	+	hydrolysis
[Ref.: #29172]	glucose ChEBI	+	carbon source
[Ref.: #29172]	glutamate ChEBI	+	carbon source
[Ref.: #29172]	glycogen ChEBI	+	carbon source
[Ref.: #29172]	L-alaninamide ChEBI	+	carbon source
[Ref.: #29172]	maltose ChEBI	+	carbon source
[Ref.: #29172]	mannose ChEBI	+	carbon source
[Ref.: #29172]	ornithine ChEBI	+	carbon source
[Ref.: #29172]	proline ChEBI	+	carbon source
[Ref.: #29172]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29172]	acid phosphatase	+	3.1.3.2
[Ref.: #29172]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29172]	catalase	+	1.11.1.6
[Ref.: #29172]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	China No.1 glacier (Xinjiang Uygur Autonomous Region)
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29172]	Flavobacterium sp. 0563 16S ribosomal RNA gene, partial sequence	EU036219	1427	GenBank	459471 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium tiangeerense CGMCC 1.6847	GCA_007830355	scaffold	GenBank	459471 tax ID	*
[Ref.: #66792]	Flavobacterium tiangeerense strain CGMCC 1.6847	459471.3	wgs	PATRIC	459471 tax ID	*
[Ref.: #66792]	Flavobacterium tiangeerense CGMCC 1.6847	2596583560	draft	JGI IMG/M	459471 tax ID	*

[Ref.: #29172]	GC-content	34.8 mol%
[Ref.: #67770]	GC-content	34.8 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium tiangeerense CGMCC 1.6847 NCBI: GCA_007830355.1
[Ref.: #69480]	anaerobic	no	99.583	no
[Ref.: #69480]	thermophile	no	99.981	yes
[Ref.: #69480]	gram-positive	no	99.998	no
[Ref.: #69480]	spore-forming	no	99.997	yes
[Ref.: #69480]	motile	no	81.969	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium tiangeerense CGMCC 1.6847 NCBI: GCA_007830355.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #29172]

Culture collection no.

CGMCC 1.6847, JCM 15087, CIP 110391

[Ref.: #20218]

Associated Passport(s) in StrainInfo

845763, 843813

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium xueshanense sp. nov. and Flavobacterium urumqiense sp. nov., two psychrophilic bacteria isolated from glacier ice.	Dong K, Liu H, Zhang J, Zhou Y, Xin Y	Int J Syst Evol Microbiol	10.1099/ijs.0.030049-0	2011	*
Phylogeny	Flavobacterium tiangeerense sp. nov., a cold-living bacterium isolated from a glacier.	Xin YH, Liang ZH, Zhang DC, Liu HC, Zhang JL, Yu Y, Xu MS, Zhou PJ, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijs.0.007906-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29172

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25596 (see below)

#33354 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#25596

IJSEM 2773 2009 ( DOI 10.1099/ijs.0.007906-0 , PubMed 19625423 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Flavobacterium tiangeerense in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Flavobacterium tiangeerense CGMCC 1.6847

Flavobacterium tiangeerense CGMCC 1.6847

Change proposal

Change proposal