Name: Muricauda olearia 5KCCM90075
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133485

Type strain:

Species: Muricauda olearia

Strain Designation: 5KCCM90075, CL-SS4

Culture col. no.: JCM 15563, KCCM 90075

Strain history: B. C. Cho CL-SS4.

NCBI tax ID(s): 552546 (species)

Section

Muricauda olearia 5KCCM90075 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	Muricauda
	Species	Muricauda olearia
	Full Scientific Name (LPSN)	Muricauda olearia Hwang et al. 2009

Synonym

Allomuricauda olearia

Information on morphological and physiological properties Morphology

[Ref.: #29164]	Gram stain	negative

[Ref.: #29164]	Cell length	3 µm

[Ref.: #29164]	Cell width	0.35 µm

[Ref.: #29164]	Cell shape	rod-shaped

[Ref.: #29164]	Motility	no

[Ref.: #29164]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29164]	growth	15-40 °C
[Ref.: #29164]	optimum	27.5 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #29164]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29164]			optimum	7.25
[Ref.: #29164]			growth	5.2-9.4

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29164]

Oxygen tolerance

aerobe

[Ref.: #29164]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29164]		NaCl		growth	1.0-6.0	%
[Ref.: #29164]		NaCl		optimum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29164]	arginine ChEBI	+	carbon source
[Ref.: #29164]	cellobiose ChEBI	+	carbon source
[Ref.: #29164]	fructose ChEBI	+	carbon source
[Ref.: #29164]	gelatin ChEBI	+	carbon source
[Ref.: #29164]	glucose ChEBI	+	carbon source
[Ref.: #29164]	glutamate ChEBI	+	carbon source
[Ref.: #29164]	lactose ChEBI	+	carbon source
[Ref.: #29164]	mannose ChEBI	+	carbon source
[Ref.: #29164]	pyruvate ChEBI	+	carbon source
[Ref.: #29164]	raffinose ChEBI	+	carbon source
[Ref.: #29164]	ribose ChEBI	+	carbon source
[Ref.: #29164]	sucrose ChEBI	+	carbon source
[Ref.: #29164]	trehalose ChEBI	+	carbon source
[Ref.: #29164]	tween 20 ChEBI	+	carbon source
[Ref.: #29164]	tween 40 ChEBI	+	carbon source
[Ref.: #29164]	tween 60 ChEBI	+	carbon source
[Ref.: #29164]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29164]	acid phosphatase	+	3.1.3.2
[Ref.: #29164]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29164]	catalase	+	1.11.1.6
[Ref.: #29164]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29164]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Crude-oil-contaminated seawater from the west coast of Korea
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29164]	Muricauda olearia strain CL-SS4 16S ribosomal RNA gene, partial sequence	EU888117	1417	GenBank	552546 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Allomuricauda olearia CL-SS4	GCA_009184425	scaffold	GenBank	552546 tax ID	*
[Ref.: #66792]	Muricauda olearia strain CL-SS4	552546.5	wgs	PATRIC	552546 tax ID	*

[Ref.: #29164]	GC-content	50.7 mol%
[Ref.: #67770]	GC-content	50.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Muricauda olearia CL-SS4 NCBI: GCA_009184425.1
[Ref.: #69480]	motile	no	87.653	yes
[Ref.: #69480]	flagellated	no	94.925	no
[Ref.: #69480]	gram-positive	no	98.655	no
[Ref.: #69480]	anaerobic	no	99.441	yes
[Ref.: #69480]	aerobic	yes	85.508	yes
[Ref.: #69480]	halophile	no	73.572	no
[Ref.: #69480]	spore-forming	no	96.592	yes
[Ref.: #69480]	thermophile	no	98.978	yes
[Ref.: #69480]	glucose-util	yes	87.271	no
[Ref.: #69480]	glucose-ferment	no	88.421	no

Availability in culture collections External links

[Ref.: #29164]

Culture collection no.

JCM 15563, KCCM 90075

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Muricauda alvinocaridis sp. nov., isolated from shrimp gill from the Okinawa Trough.	Liu L, Yu M, Zhou S, Fu T, Sun W, Wang L, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003953	2020	*
Phylogeny	Muricauda taeanensis sp. nov., isolated from a marine tidal flat.	Kim JM, Jin HM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.047647-0	2013	*
Phylogeny	Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea.	Kim D, Yoo Y, Khim JS, Yang D, Pathiraja D, Choi IG, Kim JJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004312	2020	*
Phylogeny	Muricauda indica sp. nov., isolated from deep sea water.	Zhang X, Liu X, Lai Q, Du Y, Sun F, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002602	2018	*
Metabolism	Zeaxanthin production by novel marine isolates from coastal sand of India and its antioxidant properties.	Prabhu S, Rekha PD, Young CC, Hameed A, Lin SY, Arun AB	Appl Biochem Biotechnol	10.1007/s12010-013-0397-6	2013	*
Phylogeny	Muricauda olearia sp. nov., isolated from crude-oil-contaminated seawater, and emended description of the genus Muricauda.	Hwang CY, Kim MH, Bae GD, Zhang GI, Kim YH, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.007708-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29164

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25588 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#25588

IJSEM 1856 2009 ( DOI 10.1099/ijs.0.007708-0 , PubMed 19567580 )

* These data were automatically processed and therefore are not curated

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Muricauda olearia CL-SS4

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