Name: Tenacibaculum crassostreae JO-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133479

Type strain:

Species: Tenacibaculum crassostreae

Strain Designation: JO-1

Culture col. no.: KCTC 22329, JCM 15428

Strain history: J. S. Jung JO-1.

NCBI tax ID(s): 502683 (species)

Section

Tenacibaculum crassostreae JO-1 is an aerobe, Gram-negative, motile bacterium that was isolated from oyster.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Tenacibaculum*
	Species	**Tenacibaculum crassostreae**
	Full Scientific Name (LPSN)	Tenacibaculum crassostreae Lee et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29128]	Gram stain	negative

[Ref.: #29128]	Cell length	3.25 µm

[Ref.: #29128]	Cell width	0.3 µm

[Ref.: #29128]	Cell shape	rod-shaped

[Ref.: #29128]	Motility	yes

[Ref.: #29128]	Flagellum arrangement	gliding

[Ref.: #29128]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29128]	growth	15-37 °C
[Ref.: #29128]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #29128]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29128]			optimum	6.5
[Ref.: #29128]			growth	6.0-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29128]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29128]	asparagine ChEBI	+	carbon source
[Ref.: #29128]	aspartate ChEBI	+	carbon source
[Ref.: #29128]	dextrin ChEBI	+	carbon source
[Ref.: #29128]	fucose ChEBI	+	carbon source
[Ref.: #29128]	lactate ChEBI	+	carbon source
[Ref.: #29128]	mannitol ChEBI	+	carbon source
[Ref.: #29128]	ornithine ChEBI	+	carbon source
[Ref.: #29128]	proline ChEBI	+	carbon source
[Ref.: #29128]	succinate ChEBI	+	carbon source
[Ref.: #29128]	thymidine ChEBI	+	carbon source
[Ref.: #29128]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29128]	acid phosphatase	+	3.1.3.2
[Ref.: #29128]	catalase	+	1.11.1.6
[Ref.: #29128]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29128]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29128]	Sample type/isolated from	oyster

[Ref.: #67770]	Sample type/isolated from	Pacific oyster, Crassostrea gigas
[Ref.: #67770]	Host species	Crassostrea gigas
[Ref.: #67770]	Geographic location (country and/or sea, region)	Wan Island, Jeonnam Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU428783 (>99% sequence identity) for Tenacibaculum crassostreae subclade from Microbeatlas

Aquatic Samples	59
Soil Samples	1
Animal Samples	13
Plant Samples
Total Samples	73

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29128]	Tenacibaculum crassostreae strain JO-1 16S ribosomal RNA gene, partial sequence	EU428783	1396	GenBank	502683 tax ID

[Ref.: #29128]	GC-content	31.4 mol%
[Ref.: #67770]	GC-content	31.4 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #29128]

Culture collection no.

KCTC 22329, JCM 15428

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tenacibaculum crassostreae sp. nov., isolated from the Pacific oyster, Crassostrea gigas.	Lee YS, Baik KS, Park SY, Kim EM, Lee DH, Kahng HY, Jeon CO, Jung JS	Int J Syst Evol Microbiol	10.1099/ijs.0.006866-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29128

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25554 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#25554

IJSEM 1609 2009 ( DOI 10.1099/ijs.0.006866-0 , PubMed 19542127 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Tenacibaculum crassostreae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF