Chryseobacterium taklimakanense (CCTCC AB 208154, NRRL B-51322, CCUG 68730)

Name: Chryseobacterium taklimakanense (CCTCC AB 208154, NRRL B-51322, CCUG 68730)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133475

Type strain

Strain Designation X-65

Culture col. no. CCTCC AB 208154 NRRL B-51322 CCUG 68730 NCTC 13490 X-65

NCBI tax ID(s) 536441

Special Collections CCUG Literature strains

Links

Chryseobacterium taklimakanense X-65 is a facultative anaerobe, Gram-negative, motile prokaryote that was isolated from soil.

Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 409265

NCTC 13490,CCUG 68730

@ref 20215

Last LPSN update 2026-02-09 11:31:57

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium taklimakanense

Full scientific name Chryseobacterium taklimakanense (Peng et al. 2009) Holmes et al. 2013

Synonyms (1)

Planobacterium taklimakanense

BacDive ID	Other strains from **Chryseobacterium taklimakanense** (2)	Type strain
156152	C. taklimakanense CCUG 60561, NCTC 13527
157036	C. taklimakanense CCUG 69025

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29115	negative	1.25 µm	0.5 µm	rod-shaped
125439	negative				99.9
125438					90
125438	negative				99.5

Pigmentation

29115

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
29115	positive	growth	18-37
29115	positive	optimum	30	mesophilic
63519	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29115	positive	optimum	7.5
29115	positive	growth	06-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29115	facultative anaerobe
63519	aerobe
125439	obligate aerobe	95.1

Spore formation

@ref	Spore formation	Confidence
29115
125439		98.8
125438		91.803

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29115	NaCl	positive	growth	0-3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29115	37054 ChEBI	3-hydroxybutyrate	+	carbon source
29115	16449 ChEBI	alanine	+	carbon source
29115	22599 ChEBI	arabinose	+	carbon source
29115	22653 ChEBI	asparagine	+	carbon source
29115	35391 ChEBI	aspartate	+	carbon source
29115	17057 ChEBI	cellobiose	+	carbon source
29115	23652 ChEBI	dextrin	+	carbon source
29115	4853 ChEBI	esculin	+	hydrolysis
29115	24265 ChEBI	gluconate	+	carbon source
29115	17234 ChEBI	glucose	+	carbon source
29115	29987 ChEBI	glutamate	+	carbon source
29115	28087 ChEBI	glycogen	+	carbon source
29115	17596 ChEBI	inosine	+	carbon source
29115	21217 ChEBI	L-alaninamide	+	carbon source
29115	24996 ChEBI	lactate	+	carbon source
29115	25017 ChEBI	leucine	+	carbon source
29115	17306 ChEBI	maltose	+	carbon source
29115	37684 ChEBI	mannose	+	carbon source
29115	28053 ChEBI	melibiose	+	carbon source
29115	51850 ChEBI	methyl pyruvate	+	carbon source
29115	18257 ChEBI	ornithine	+	carbon source
29115	26271 ChEBI	proline	+	carbon source
29115	17822 ChEBI	serine	+	carbon source
29115	30911 ChEBI	sorbitol	+	carbon source
29115	26986 ChEBI	threonine	+	carbon source
29115	27082 ChEBI	trehalose	+	carbon source
29115	16704 ChEBI	uridine	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29115	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
29115	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
29115	acid phosphatase	+	3.1.3.2
29115	alkaline phosphatase	+	3.1.3.1
29115	catalase	+	1.11.1.6
29115	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	glycogen metabolism	100	5 of 5
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	palmitate biosynthesis	95.45	21 of 22
66794	starch degradation	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	peptidoglycan biosynthesis	80	12 of 15
66794	propionate fermentation	80	8 of 10
66794	glycine betaine biosynthesis	80	4 of 5
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	heme metabolism	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	purine metabolism	72.34	68 of 94
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	d-mannose degradation	66.67	6 of 9
66794	serine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	methionine metabolism	65.38	17 of 26
66794	tyrosine metabolism	64.29	9 of 14
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	phenylalanine metabolism	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	threonine metabolism	60	6 of 10
66794	cellulose degradation	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	glycolysis	58.82	10 of 17
66794	non-pathway related	57.89	22 of 38
66794	glutathione metabolism	57.14	8 of 14
66794	alanine metabolism	55.17	16 of 29
66794	lipid metabolism	54.84	17 of 31
66794	pentose phosphate pathway	54.55	6 of 11
66794	vitamin B1 metabolism	53.85	7 of 13
66794	leucine metabolism	53.85	7 of 13
66794	tryptophan metabolism	52.63	20 of 38
66794	ethanol fermentation	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	isoleucine metabolism	50	4 of 8
66794	kanosamine biosynthesis II	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	proline metabolism	45.45	5 of 11
66794	oxidative phosphorylation	41.76	38 of 91
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	histidine metabolism	41.38	12 of 29
66794	carotenoid biosynthesis	40.91	9 of 22
66794	arachidonate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	gallate degradation	40	2 of 5
66794	Entner Doudoroff pathway	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	degradation of pentoses	35.71	10 of 28
66794	cyanate degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	arachidonic acid metabolism	33.33	6 of 18
66794	pantothenate biosynthesis	33.33	2 of 6
66794	valine metabolism	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	urea cycle	30.77	4 of 13
66794	sulfate reduction	30.77	4 of 13
66794	glycine metabolism	30	3 of 10
66794	arginine metabolism	29.17	7 of 24
66794	mevalonate metabolism	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	d-xylose degradation	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	metabolism of disaccharids	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	toluene degradation	25	1 of 4
66794	polyamine pathway	21.74	5 of 23

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent
29115	soil
63519	Desert soil	2009	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU718058 (>99% sequence identity) for Chryseobacterium taklimakanense subclade from Microbeatlas

Aquatic Samples	1299
Soil Samples	672
Animal Samples	5698
Plant Samples	145
Total Samples	7814

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	50618_E01 assembly for Chryseobacterium taklimakanense NCTC13490	complete	GCA_900187185	536441.3	2765235860	536441	96.37

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29115	Planobacterium taklimakanense strain X-65 16S ribosomal RNA gene, partial sequence	EU718058	1391		536441

GC content

29115

GC-content (mol%)41.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Chryseobacterium taklimakanense strain NCTC13490
PATRIC: 536441.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.80	no
125439	motility	BacteriaNetⓘ	no	83.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chryseobacterium taklimakanense NCTC13490
NCBI: GCA_900187185.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	yes
125438	anaerobic	anaerobicⓘ	no	94.33	no
125438	aerobic	aerobicⓘ	yes	84.40	no
125438	spore-forming	spore-formingⓘ	no	91.80	no
125438	thermophilic	thermophileⓘ	no	97.25	yes
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planobacterium taklimakanense gen. nov., sp. nov., a member of the family Flavobacteriaceae that exhibits swimming motility, isolated from desert soil.	Peng F, Liu M, Zhang L, Dai J, Luo X, An H, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.006619-0	2009
Phylogeny	Chryseobacterium frigidum sp. nov., isolated from high-Arctic tundra soil, and emended descriptions of Chryseobacterium bernardetii and Chryseobacterium taklimakanense.	Kim T, Kim M, Kang O, Jiang F, Chang X, Liu P, Zhang Y, Da X, Zheng C, Fang C, Peng F	Int J Syst Evol Microbiol	10.1099/ijsem.0.000761	2015
Phylogeny	DNA-DNA hybridization study of strains of Chryseobacterium, Elizabethkingia and Empedobacter and of other usually indole-producing non-fermenters of CDC groups IIc, IIe, IIh and IIi, mostly from human clinical sources, and proposals of Chryseobacterium bernardetii sp. nov., Chryseobacterium carnis sp. nov., Chryseobacterium lactis sp. nov., Chryseobacterium nakagawai sp. nov. and Chryseobacterium taklimakanense comb. nov.	Holmes B, Steigerwalt AG, Nicholson AC	Int J Syst Evol Microbiol	10.1099/ijs.0.054353-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25541	IJSEM 1672 2009 ( DOI 10.1099/ijs.0.006619-0 , PubMed 19542118 )
#29115	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25541
#63519	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 68730
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium taklimakanense (CCTCC AB 208154, NRRL B-51322, CCUG 68730)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900187185

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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