Rhizobium mesosinicum (5LMG24135, JCM 14777, CCBAU 25010)

Name: Rhizobium mesosinicum (5LMG24135, JCM 14777, CCBAU 25010)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133473

Type strain

Strain Designation 5LMG24135

Culture col. no. 5LMG24135 JCM 14777 CCBAU 25010 LMG 24135

NCBI tax ID(s) 335017

Special Collections JCM Literature strains

Links

Rhizobium mesosinicum 5LMG24135 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from plant endophyte.

Gram-negative motile rod-shaped aerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 293782

JCM 14777,LMG 24135

@ref 20215

Last LPSN update 2025-12-16 10:01:47

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Rhizobium

Species Rhizobium mesosinicum

Full scientific name Rhizobium mesosinicum Lin et al. 2009

BacDive ID	Other strains from **Rhizobium mesosinicum** (1)	Type strain
161331	R. mesosinicum JCM 13233, CCBAU 41044

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29107	negative	1.8 µm	0.6 µm	rod-shaped

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
29107	positive	optimum	25-30	mesophilic
29107	positive	growth	37	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29107	positive	optimum	7
29107	positive	growth	4.0-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

29107

Oxygen toleranceaerobe

Spore formation

29107

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29107	NaCl	positive	growth	2 %

Observation

29107

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29107	33942 ChEBI	ribose	+	carbon source
29107	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29107	catalase	+	1.11.1.6
29107	cytochrome oxidase	+	1.9.3.1
29107	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Other
#Host	#Plants

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
29107	plant endophyte
67770	Root nodules of Albizia julibrissin	Albizia julibrissin	Shandong Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ100063 (>99% sequence identity) for Rhizobium from Microbeatlas

Aquatic Samples	181
Soil Samples	1145
Animal Samples	198
Plant Samples	366
Total Samples	1890

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score
66792	Rhizobium mesosinicum LMG 24135	complete	2739367594	335017	78.48

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29107	Rhizobium mesosinicum strain CCBAU 25010 16S ribosomal RNA gene, partial sequence	DQ100063	1356		335017
124043	Rhizobium mesosinicum strain CCBAU 25010 16S-23S ribosomal RNA intergenic spacer, partial sequence.	EU120729	1020		335017

GC content

@ref	GC-content (mol%)	Method
29107	61.8
67770	61.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Symbiotic efficiency and genetic characterization of rhizobia and non rhizobial endophytes associated with cowpea grown in semi-arid tropics of Kenya.	Muindi MM, Muthini M, Njeru EM, Maingi J.	Heliyon	10.1016/j.heliyon.2021.e06867	2021
Phylogeny	Estimating Divergence Times and Substitution Rates in Rhizobia.	Chriki-Adeeb R, Chriki A.	Evol Bioinform Online	10.4137/ebo.s39070	2016
Phylogeny	Reclassification of Arthrobacter viscosus as Rhizobium viscosum comb. nov.	Flores-Felix JD, Ramirez-Bahena MH, Salazar S, Peix A, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijsem.0.001864	2017
Phylogeny	Rhizobium mesosinicum sp. nov., isolated from root nodules of three different legumes.	Lin DX, Chen WF, Wang FQ, Hu D, Wang ET, Sui XH, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.006387-0	2009
Phylogeny	Rhizobium petrolearium sp. nov., isolated from oil-contaminated soil.	Zhang X, Li B, Wang H, Sui X, Ma X, Hong Q, Jiang R	Int J Syst Evol Microbiol	10.1099/ijs.0.026880-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25535	IJSEM 1919 2009 ( DOI 10.1099/ijs.0.006387-0 , PubMed 19567587 )
#29107	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25535
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhizobium mesosinicum (5LMG24135, JCM 14777, CCBAU 25010)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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