Name: Rhizobium mesosinicum 5LMG24135
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133473

Type strain:

Species: Rhizobium mesosinicum

Strain Designation: 5LMG24135

Culture col. no.: JCM 14777, CCBAU 25010, LMG 24135

Strain history: CCBAU 25010.

NCBI tax ID(s): 335017 (species)

SI-ID 293782

JCM 14777, LMG 24135

Other strains from Rhizobium mesosinicum

R. mesosinicum JCM 13233, CCBAU 41044

Section

Rhizobium mesosinicum 5LMG24135 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from plant endophyte.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium mesosinicum**
	Full Scientific Name (LPSN)	Rhizobium mesosinicum Lin et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29107]	Gram stain	negative

[Ref.: #29107]	Cell length	1.8 µm

[Ref.: #29107]	Cell width	0.6 µm

[Ref.: #29107]	Cell shape	rod-shaped

[Ref.: #29107]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29107]	growth	25-30 °C
[Ref.: #29107]	optimum	37 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #29107]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29107]			optimum	7
[Ref.: #29107]			growth	4.0-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29107]

Oxygen tolerance

aerobe

[Ref.: #29107]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29107]		NaCl		growth	2	%

[Ref.: #29107]

Observation

aggregates in clumps

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29107]		ribose ChEBI	+	carbon source
[Ref.: #29107]		xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29107]	catalase	+	1.11.1.6
[Ref.: #29107]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29107]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29107]	Sample type/isolated from	plant endophyte

[Ref.: #67770]	Sample type/isolated from	Root nodules of Albizia julibrissin
[Ref.: #67770]	Host species	Albizia julibrissin
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shandong Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Other	-
#Host	#Plants	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ100063 (>99% sequence identity) for Rhizobium from Microbeatlas

Aquatic Samples	181
Soil Samples	1145
Animal Samples	198
Plant Samples	366
Total Samples	1890

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29107]	Rhizobium mesosinicum strain CCBAU 25010 16S ribosomal RNA gene, partial sequence	DQ100063	1356	GenBank	335017 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium mesosinicum LMG 24135	2739367594	draft	JGI IMG/M	335017 tax ID	*

[Ref.: #29107]	GC-content	61.8 mol%
[Ref.: #67770]	GC-content	61.8 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #29107]

Culture collection no.

JCM 14777, CCBAU 25010, LMG 24135

[Ref.: #91456]

SI-ID 293782

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Arthrobacter viscosus as Rhizobium viscosum comb. nov.	Flores-Felix JD, Ramirez-Bahena MH, Salazar S, Peix A, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijsem.0.001864	2017	*
Phylogeny	Rhizobium mesosinicum sp. nov., isolated from root nodules of three different legumes.	Lin DX, Chen WF, Wang FQ, Hu D, Wang ET, Sui XH, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.006387-0	2009	*
Phylogeny	Rhizobium petrolearium sp. nov., isolated from oil-contaminated soil.	Zhang X, Li B, Wang H, Sui X, Ma X, Hong Q, Jiang R	Int J Syst Evol Microbiol	10.1099/ijs.0.026880-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29107

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25535 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91456

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293782.1 )

#25535

IJSEM 1919 2009 ( DOI 10.1099/ijs.0.006387-0 , PubMed 19567587 )

* These data were automatically processed and therefore are not curated

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