Name: Roseomonas frigidaquae CW67T
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133456

Type strain:

Species: Roseomonas frigidaquae

Strain Designation: CW67T, CW67

Culture col. no.: KCTC 22211, JCM 15073

Strain history: <- CN Seong, Sunchon Natl. Univ.

NCBI tax ID(s): 487318 (species)

Special Collections

Section

Roseomonas frigidaquae CW67T is an aerobe, spore-forming, Gram-negative bacterium that was isolated from water cooling system.

Gram-negative
ovoid-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Roseomonas*
	Species	**Roseomonas frigidaquae**
	Full Scientific Name (LPSN)	Roseomonas frigidaquae Kim et al. 2009

Synonym

Falsiroseomonas frigidaquae

Information on morphological and physiological properties Morphology

[Ref.: #29046]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.796

[Ref.: #29046]	Cell length	0.9 µm

[Ref.: #29046]	Cell width	0.7 µm

[Ref.: #29046]	Cell shape	ovoid-shaped

[Ref.: #29046]	Motility	no

[Ref.: #29046]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29046]	growth	15-37 °C
[Ref.: #29046]	optimum	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29046]			optimum	7
[Ref.: #29046]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29046]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29046]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29046]		NaCl		growth	0-3	%
[Ref.: #29046]		NaCl		optimum	0.5	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29046]		nitrate ChEBI	+	reduction
[Ref.: #29046]		tween 20 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29046]	acid phosphatase	+	3.1.3.2
[Ref.: #29046]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29046]	catalase	+	1.11.1.6
[Ref.: #29046]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29046]	Sample type/isolated from	water cooling system

[Ref.: #67770]	Sample type/isolated from	Water-cooling system at an oxygen-producing plant in Gwangyang
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From water cooling
[Ref.: #67771]	Geographic location (country and/or sea, region)	Gwangyang
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU290160 (>99% sequence identity) for Roseomonas frigidaquae subclade from Microbeatlas

Aquatic Samples	129
Soil Samples	130
Animal Samples	48
Plant Samples	9
Total Samples	316

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29046]	Roseomonas frigidaquae strain CW67 16S ribosomal RNA gene, partial sequence	EU290160	1466	GenBank ENA	487318 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Falsiroseomonas frigidaquae JCM	GCA_013184735	contig	GenBank ENA	487318 tax ID
[Ref.: #67770]	Falsiroseomonas frigidaquae JCM 15073	GCA_012163145	contig	GenBank ENA	487318 tax ID
[Ref.: #66792]	Roseomonas frigidaquae strain JCM 15073	487318.3	wgs	PATRIC	487318 tax ID	*

[Ref.: #29046]	GC-content	69.5 mol%
[Ref.: #67770]	GC-content	69.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Roseomonas frigidaquae strain JCM 15073 PATRIC: 487318.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Roseomonas frigidaquae strain JCM 15073 PATRIC: 487318.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.796	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.94	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	66.866	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.143	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.475	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	71.133	no

Availability in culture collections External links

[Ref.: #29046]

Culture collection no.

KCTC 22211, JCM 15073

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseomonas selenitidurans sp. nov., isolated from urban soil, and emended description of Roseomonas frigidaquae.	Hou X, Liu H, Wei S, Ding Z, Sang F, Zhao Y, Dong Y, Li H, Wang Q, Zhao J, Deng H, Zhang C, Kong L, Gao Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004496	2020	*
Phylogeny	Roseomonas tokyonensis sp. nov. isolated from a biofilm sample obtained from a cooling tower in Tokyo, Japan.	Furuhata K, Ishizaki N, Edagawa A, Fukuyama M	Biocontrol Sci	10.4265/bio.18.205	2013	*
Phylogeny	Roseomonas frigidaquae sp. nov., isolated from a water-cooling system.	Kim MS, Baik KS, Park SC, Rhee MS, Oh HM, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.004812-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29046

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25476 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#25476

IJSEM 1630 2009 ( DOI 10.1099/ijs.0.004812-0 , PubMed 19542147 )

* These data were automatically processed and therefore are not curated

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Roseomonas frigidaquae strain JCM 15073

Roseomonas frigidaquae strain JCM 15073

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