Name: Microbulbifer donghaiensis CGMCC 1.7063
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133453

Type strain:

Species: Microbulbifer donghaiensis

Culture col. no.: CGMCC 1.7063, JCM 15145, CN 85

Strain history: X.-W. Xu CN85.

NCBI tax ID(s): 494016 (species)

Section

Microbulbifer donghaiensis CGMCC 1.7063 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Microbulbiferaceae*
	Genus	*Microbulbifer*
	Species	**Microbulbifer donghaiensis**
	Full Scientific Name (LPSN)	Microbulbifer donghaiensis Wang et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29036]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #29036]	Cell length	2.5-4.0 µm

[Ref.: #29036]	Cell width	0.3-0.4 µm

[Ref.: #29036]	Cell shape	rod-shaped

[Ref.: #29036]	Motility	no

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29036]	growth	20-40 °C
[Ref.: #29036]	optimum	36 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #29036]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29036]			optimum	7.5
[Ref.: #29036]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29036]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29036]		NaCl		growth	0.5-6.0	%
[Ref.: #29036]		NaCl		optimum	3	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29036]	acetate ChEBI	+	carbon source
[Ref.: #29036]	alanine ChEBI	+	carbon source
[Ref.: #29036]	arginine ChEBI	+	carbon source
[Ref.: #29036]	cellobiose ChEBI	+	carbon source
[Ref.: #29036]	esculin ChEBI	+	hydrolysis
[Ref.: #29036]	glucose ChEBI	+	carbon source
[Ref.: #29036]	histidine ChEBI	+	carbon source
[Ref.: #29036]	malate ChEBI	+	carbon source
[Ref.: #29036]	maltose ChEBI	+	carbon source
[Ref.: #29036]	nitrate ChEBI	+	reduction
[Ref.: #29036]	propionate ChEBI	+	carbon source
[Ref.: #29036]	succinate ChEBI	+	carbon source
[Ref.: #29036]	trehalose ChEBI	+	carbon source
[Ref.: #29036]	tween 20 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29036]	catalase	+	1.11.1.6
[Ref.: #29036]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29036]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29036]	Sample type/isolated from	marine sediment

[Ref.: #67770]	Sample type/isolated from	Sediment sample collected from the East China Sea
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29036]	Microbulbifer donghaiensis strain CN85 16S ribosomal RNA gene, partial sequence	EU365694	1416	GenBank	494016 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Microbulbifer donghaiensis CGMCC 1.7063	GCA_900129095	scaffold	GenBank	494016 tax ID
[Ref.: #66792]	Microbulbifer donghaiensis strain CGMCC 1.7063	494016.4	wgs	PATRIC	494016 tax ID	*
[Ref.: #66792]	Microbulbifer donghaiensis CGMCC 1.7063	2619618825	draft	JGI IMG/M	494016 tax ID	*

[Ref.: #29036]	GC-content	57.8 mol%
[Ref.: #67770]	GC-content	57.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbulbifer donghaiensis CGMCC 1.7063 NCBI: GCA_900129095.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbulbifer donghaiensis strain CGMCC 1.7063 PATRIC: 494016.4
[Ref.: #69480]	gram-positive	no	98.677	yes
[Ref.: #69480]	anaerobic	no	99.035	yes
[Ref.: #69480]	halophile	yes	62.431	no
[Ref.: #69480]	spore-forming	no	96.729	no
[Ref.: #69480]	glucose-util	yes	88.602	yes
[Ref.: #69480]	aerobic	yes	91.284	no
[Ref.: #69480]	motile	no	86.419	yes
[Ref.: #69480]	thermophile	no	98.144	yes
[Ref.: #69480]	flagellated	no	94.275	no
[Ref.: #69480]	glucose-ferment	no	88.523	no

Availability in culture collections External links

[Ref.: #29036]

Culture collection no.

CGMCC 1.7063, JCM 15145, CN 85

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbulbifer hainanensis sp. nov., a moderately halopilic bacterium isolated from mangrove sediment.	Cheng Y, Zhu S, Guo C, Xie F, Jung D, Li S, Zhang W, He S	Antonie Van Leeuwenhoek	10.1007/s10482-021-01574-y	2021	*
Phylogeny	Microbulbifer taiwanensis sp. nov., isolated from coastal soil.	Kampfer P, Arun AB, Young CC, Rekha PD, Martin K, Busse HJ, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.034512-0	2011	*
Phylogeny	Microbulbifer gwangyangensis sp. nov. and Microbulbifer pacificus sp. nov., isolated from marine environments.	Jeong SH, Yang SH, Jin HM, Kim JM, Kwon KK, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.042606-0	2012	*
Phylogeny	Microbulbifer marinus sp. nov. and Microbulbifer yueqingensis sp. nov., isolated from marine sediment.	Zhang DS, Huo YY, Xu XW, Wu YH, Wang CS, Xu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.027714-0	2011	*
Phylogeny	Microbulbifer donghaiensis sp. nov., isolated from marine sediment of the East China Sea.	Wang CS, Wang Y, Xu XW, Zhang DS, Wu YH, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.004531-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29036

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25466 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#25466

IJSEM 545 2009 ( DOI 10.1099/ijs.0.004531-0 , PubMed 19244438 )

* These data were automatically processed and therefore are not curated

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Microbulbifer donghaiensis CGMCC 1.7063

Microbulbifer donghaiensis strain CGMCC 1.7063

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