Oceanibaculum indicum (CCTCC AB 208226, LMG 24626, MCCC 1A02083)

Name: Oceanibaculum indicum (CCTCC AB 208226, LMG 24626, MCCC 1A02083)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133449

Type strain

Strain Designation P24

Culture col. no. CCTCC AB 208226 LMG 24626 MCCC 1A02083 P24

NCBI tax ID(s) 526216

Special Collections Literature strains

Links

Oceanibaculum indicum P24 is a Gram-negative, motile, rod-shaped prokaryote that was isolated from seawater.

Gram-negative motile rod-shaped genome sequence 16S sequence

Name and taxonomic classification

SI-ID 354040

LMG 24626

@ref 20215

Last LPSN update 2025-12-16 10:01:47

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Thalassobaculaceae

Genus Oceanibaculum

Species Oceanibaculum indicum

Full scientific name Oceanibaculum indicum Lai et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
29028	negative	2.4 µm	1.05 µm	rod-shaped
125438	negative
125439	negative

Pigmentation

29028

Productionno

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
29028	positive	growth	10-42
29028	positive	optimum	31

Culture pH

@ref	Ability	Type	PH
29028	positive	optimum	8
29028	positive	growth	06-11

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.8

Spore formation

@ref	Spore formation	Confidence
125439		98.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29028	NaCl	positive	growth	0-9 %
29028	NaCl	positive	optimum	3.75 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29028	16449 ChEBI	alanine	+	carbon source
29028	29987 ChEBI	glutamate	+	carbon source
29028	18403 ChEBI	L-arabitol	+	carbon source
29028	25017 ChEBI	leucine	+	carbon source
29028	17632 ChEBI	nitrate	+	reduction
29028	26271 ChEBI	proline	+	carbon source
29028	26546 ChEBI	rhamnose	+	carbon source
29028	53423 ChEBI	tween 40	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29028	acid phosphatase	+	3.1.3.2
29028	alkaline phosphatase	+	3.1.3.1
29028	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

29028

Sample typeseawater

Taxonmaps

69479

Global distribution of 16S sequence EU656113 (>99% sequence identity) for Oceanibaculum indicum from Microbeatlas

Aquatic Samples	210
Soil Samples	26
Animal Samples	44
Plant Samples	8
Total Samples	288

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM29993v1 assembly for Oceanibaculum indicum P24	contig	GCA_000299935	1207063.32	2531839096	1207063	64.56

Genome browser: GCA_000299935

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29028	Oceanibaculum indicum strain P24 16S ribosomal RNA gene, partial sequence	EU656113	1451		1207063

GC content

29028

GC-content (mol%)64.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Oceanibaculum indicum P24
NCBI: GCA_000299935

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	yes	69.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Oceanibaculum indicum P24
PATRIC: 1207063.32

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.99	no
125438	anaerobic	anaerobicⓘ	no	92.85	no
125438	spore-forming	spore-formingⓘ	no	84.44	no
125438	aerobic	aerobicⓘ	yes	76.24	no
125438	thermophilic	thermophileⓘ	no	93.59	no
125438	flagellated	motile2+ⓘ	yes	77.67	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanibaculum indicum gen. nov., sp. nov., isolated from deep seawater of the Indian Ocean.	Lai Q, Yuan J, Wu C, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.004341-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29028	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25458 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Oceanibaculum indicum (CCTCC AB 208226, LMG 24626, MCCC 1A02083)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000299935

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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