Niabella ginsengisoli (KACC 13021, JCM 15444, GR10-1)

Name: Niabella ginsengisoli (KACC 13021, JCM 15444, GR10-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133448

Type strain

Strain Designation GR10-1

Culture col. no. KACC 13021 JCM 15444 GR10-1 NBRC 106414

NCBI tax ID(s) 522298

Special Collections JCM Literature strains

Links

Niabella ginsengisoli GR10-1 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from soil.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132183

JCM 15444,NBRC 106414

@ref 20215

Last LPSN update 2025-12-16 10:01:47

Domain Pseudomonadati

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Niabella

Species Niabella ginsengisoli

Full scientific name Niabella ginsengisoli Weon et al. 2009

Synonyms (1)

"Paraniabella ginsengisoli"

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
29027	negative	1.45 µm	0.7 µm	rod-shaped
125438	negative					95.423

Pigmentation

29027

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
29027	positive	growth	05-35
29027	positive	optimum	29	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
29027	positive	optimum	7
29027	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

29027

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29027	NaCl	positive	growth	0-2 %
29027	NaCl	positive	optimum	0.5 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29027	4853 ChEBI	esculin	+	hydrolysis

Enzymes

@ref	Value	Activity	Ec
29027	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
29027	soil
67770	Soil cultivated with Korean ginseng (Panax ginseng Meyer) in Yeongju region	Panax ginseng	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU616816 (>99% sequence identity) for Niabella ginsengisoli subclade from Microbeatlas

Aquatic Samples	79
Soil Samples	553
Animal Samples	360
Plant Samples	144
Total Samples	1136

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2251363v1 assembly for Niabella ginsengisoli GR10-1	contig	GCA_022513635	522298.3	8065642296	522298	50.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29027	Niabella ginsengisoli strain GR10-1 16S ribosomal RNA gene, partial sequence	EU616816	1459		522298
124043	Niabella ginsengisoli gene for 16S rRNA, partial sequence, strain: NBRC 106414.	AB682430	1451		522298

GC content

@ref	GC-content (mol%)	Method
29027	43
67770	43	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Niabella ginsengisoli GR10-1
NCBI: GCA_022513635.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.42	no
125438	anaerobic	anaerobicⓘ	no	97.74	yes
125438	aerobic	aerobicⓘ	yes	87.92	yes
125438	spore-forming	spore-formingⓘ	no	87.30	no
125438	thermophilic	thermophileⓘ	no	97.74	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Niabella hibiscisoli sp. nov., isolated from soil of a Rose of Sharon garden.	Ngo HTT, Trinh H, Yan ZF, Moya G, Kook M, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001595	2017
Phylogeny	Niabella terrae sp. nov. isolated from greenhouse soil.	Ahn JH, Jo EH, Kim BY, Song J, Kwon SW, Weon HY	J Microbiol	10.1007/s12275-013-3507-9	2013
Phylogeny	Niabella ginsengisoli sp. nov., isolated from soil cultivated with Korean ginseng.	Weon HY, Yoo SH, Kim BY, Son JA, Kim YJ, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.004333-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29027	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25457 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Niabella ginsengisoli (KACC 13021, JCM 15444, GR10-1)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_022513635

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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