Name: Marinoscillum pacificum MRN461
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133447

Type strain:

Species: Marinoscillum pacificum

Strain Designation: MRN461

Culture col. no.: KCCM 42325, JCM 14064

Strain history: K. K. Kwon MRN461.

NCBI tax ID(s): 392723 (species)

Section

Marinoscillum pacificum MRN461 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sponge.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Reichenbachiellaceae*
	Genus	*Marinoscillum*
	Species	**Marinoscillum pacificum**
	Full Scientific Name (LPSN)	Marinoscillum pacificum Seo et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29026]	Gram stain	negative

[Ref.: #29026]	Cell length	0.35 µm

[Ref.: #29026]	Cell shape	rod-shaped

[Ref.: #29026]	Motility	yes

[Ref.: #29026]	Flagellum arrangement	gliding

[Ref.: #29026]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29026]	growth	15-40 °C
[Ref.: #29026]	optimum	33 °C
[Ref.: #67770]	growth	33 °C

[Ref.: #29026]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29026]			optimum	7.5
[Ref.: #29026]			growth	5.0-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29026]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29026]		NaCl		growth	0.4-5.4	%
[Ref.: #29026]		NaCl		optimum	2.9	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29026]	alanine ChEBI	+	carbon source
[Ref.: #29026]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #29026]	arabinose ChEBI	+	carbon source
[Ref.: #29026]	aspartate ChEBI	+	carbon source
[Ref.: #29026]	cellobiose ChEBI	+	carbon source
[Ref.: #29026]	citrate ChEBI	+	carbon source
[Ref.: #29026]	D-tryptophan ChEBI	+	carbon source
[Ref.: #29026]	dextrin ChEBI	+	carbon source
[Ref.: #29026]	fructose ChEBI	+	carbon source
[Ref.: #29026]	fucose ChEBI	+	carbon source
[Ref.: #29026]	galactose ChEBI	+	carbon source
[Ref.: #29026]	galacturonate ChEBI	+	carbon source
[Ref.: #29026]	glucuronamide ChEBI	+	carbon source
[Ref.: #29026]	glutamate ChEBI	+	carbon source
[Ref.: #29026]	lactose ChEBI	+	carbon source
[Ref.: #29026]	maltose ChEBI	+	carbon source
[Ref.: #29026]	mannitol ChEBI	+	carbon source
[Ref.: #29026]	mannose ChEBI	+	carbon source
[Ref.: #29026]	melibiose ChEBI	+	carbon source
[Ref.: #29026]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #29026]	proline ChEBI	+	carbon source
[Ref.: #29026]	raffinose ChEBI	+	carbon source
[Ref.: #29026]	rhamnose ChEBI	+	carbon source
[Ref.: #29026]	sorbitol ChEBI	+	carbon source
[Ref.: #29026]	sucrose ChEBI	+	carbon source
[Ref.: #29026]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #29026]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29026]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29026]		catalase	+	1.11.1.6
[Ref.: #29026]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29026]	Sample type/isolated from	marine sponge

[Ref.: #67770]	Sample type/isolated from	Unidentified marine sponge near the tropical Weno Island
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chuuk State
[Ref.: #67770]	Country	Micronesia, Federated States of
[Ref.: #67770]	Country ISO 3 Code	FSM
[Ref.: #67770]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29026]	Marinoscillum pacificum strain MRN461 16S ribosomal RNA gene, partial sequence	DQ660388	1496	GenBank	392723 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinoscillum pacificum MRN461	GCA_024714495	contig	GenBank	392723 tax ID	*

[Ref.: #29026]	GC-content	41.5 mol%
[Ref.: #67770]	GC-content	41.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinoscillum pacificum MRN461 NCBI: GCA_024714495.1
[Ref.: #69480]	flagellated	no	95.709	yes
[Ref.: #69480]	gram-positive	no	97.536	yes
[Ref.: #69480]	anaerobic	no	98.824	no
[Ref.: #69480]	aerobic	yes	90.72	no
[Ref.: #69480]	halophile	no	77.505	no
[Ref.: #69480]	spore-forming	no	94.645	no
[Ref.: #69480]	glucose-ferment	no	85.087	no
[Ref.: #69480]	thermophile	no	98.386	yes
[Ref.: #69480]	glucose-util	yes	87.779	no
[Ref.: #69480]	motile	no	89.295	no

Availability in culture collections External links

[Ref.: #29026]

Culture collection no.

KCCM 42325, JCM 14064

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinoscillum luteum sp. nov., isolated from marine sediment.	Cha IT, Park SJ, Kim SJ, Kim JG, Jung MY, Shin KS, Kwon KK, Yang SH, Seo YS, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.050450-0	2013	*
Phylogeny	Marinoscillum gen. nov., a member of the family 'Flexibacteraceae', with Marinoscillum pacificum sp. nov. from a marine sponge and Marinoscillum furvescens nom. rev., comb. nov.	Seo HS, Kwon KK, Yang SH, Lee HS, Bae SS, Lee JH, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.004317-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29026

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25456 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#25456

IJSEM 1204 2009 ( DOI 10.1099/ijs.0.004317-0 , PubMed 19406820 )

* These data were automatically processed and therefore are not curated

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