Name: Halomonas fontilapidosi 5CR
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133446

Type strain:

Species: Halomonas fontilapidosi

Strain Designation: 5CR

Culture col. no.: CECT 7341, LMG 24455

NCBI tax ID(s): 616675 (species)

SI-ID 323666

LMG 24455, CECT 7341

Section

Halomonas fontilapidosi 5CR is a Gram-negative, motile, rod-shaped bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas fontilapidosi**
	Full Scientific Name (LPSN)	Halomonas fontilapidosi González-Domenech et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29023]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.98

[Ref.: #29023]	Cell length	1.73 µm

[Ref.: #29023]	Cell width	0.96 µm

[Ref.: #29023]	Cell shape	rod-shaped

[Ref.: #29023]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %93.377

[Ref.: #29023]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29023]			growth	15-45 °C
[Ref.: #29023]			optimum	38.5 °C

[Ref.: #29023]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #29023]			optimum	7
[Ref.: #29023]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29023]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.985

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29023]		NaCl		growth	03-20	%
[Ref.: #29023]		NaCl		optimum	6.25	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29023]	arabinose ChEBI	+	carbon source
[Ref.: #29023]	citrate ChEBI	+	carbon source
[Ref.: #29023]	fructose ChEBI	+	carbon source
[Ref.: #29023]	galactose ChEBI	+	carbon source
[Ref.: #29023]	gluconate ChEBI	+	carbon source
[Ref.: #29023]	glucose ChEBI	+	carbon source
[Ref.: #29023]	lactate ChEBI	+	carbon source
[Ref.: #29023]	lactose ChEBI	+	carbon source
[Ref.: #29023]	maltose ChEBI	+	carbon source
[Ref.: #29023]	mannose ChEBI	+	carbon source
[Ref.: #29023]	nitrate ChEBI	+	reduction
[Ref.: #29023]	ribitol ChEBI	+	carbon source
[Ref.: #29023]	serine ChEBI	+	carbon source
[Ref.: #29023]	sorbitol ChEBI	+	carbon source
[Ref.: #29023]	succinate ChEBI	+	carbon source
[Ref.: #29023]	tween 20 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #29023]		hydrogen sulfide ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29023]		catalase	+	1.11.1.6
[Ref.: #29023]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29023]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU541349 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	417
Soil Samples	60
Animal Samples	19
Plant Samples	8
Total Samples	504

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29023]	Halomonas fontilapidosi strain 5CR 16S ribosomal RNA gene, partial sequence	EU541349	1411	GenBank	616675 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas fontilapidosi CECT 7341	GCA_014192285	scaffold	GenBank	616675 tax ID	*
[Ref.: #66792]	Halomonas fontilapidosi strain CECT 7341	616675.3	wgs	PATRIC	616675 tax ID	*
[Ref.: #66792]	Halomonas fontilapidosi CECT 7341	2824407391	draft	JGI IMG/M	616675 tax ID	*

[Ref.: #29023]

GC-content

65.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomonas fontilapidosi CECT 7341 NCBI: GCA_014192285.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas fontilapidosi CECT 7341 NCBI: GCA_014192285.1
[Ref.: #69480]	flagellated	yes	60.833	no
[Ref.: #69480]	gram-positive	no	98.612	yes
[Ref.: #69480]	anaerobic	no	98.019	no
[Ref.: #69480]	aerobic	yes	86.63	no
[Ref.: #69480]	halophile	yes	93.428	no
[Ref.: #69480]	spore-forming	no	96.357	yes
[Ref.: #69480]	glucose-util	yes	89.235	yes
[Ref.: #69480]	thermophile	no	98.43	yes
[Ref.: #69480]	glucose-ferment	no	82.795	no
[Ref.: #69480]	motile	yes	89.589	yes

Availability in culture collections External links

[Ref.: #29023]

Culture collection no.

CECT 7341, LMG 24455

[Ref.: #91446]

SI-ID 323666

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas tabrizica sp. nov., a novel moderately halophilic bacterium isolated from Urmia Lake in Iran.	Vahed SZ, Forouhandeh H, Tarhriz V, Chaparzadeh N, Hejazi MA, Jeon CO, Hejazi MS, Lee Y	Antonie Van Leeuwenhoek	10.1007/s10482-018-1018-8	2018	*
Phylogeny	Halomonas stenophila sp. nov., a halophilic bacterium that produces sulphate exopolysaccharides with biological activity.	Llamas I, Bejar V, Martinez-Checa F, Martinez-Canovas MJ, Molina I, Quesada E	Int J Syst Evol Microbiol	10.1099/ijs.0.026369-0	2010	*
Phylogeny	Halomonas fontilapidosi sp. nov., a moderately halophilic, denitrifying bacterium.	Gonzalez-Domenech CM, Martinez-Checa F, Quesada E, Bejar V	Int J Syst Evol Microbiol	10.1099/ijs.0.004275-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29023

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25453 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91446

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID323666.1 )

#25453

IJSEM 1290 2009 ( DOI 10.1099/ijs.0.004275-0 , PubMed 19502304 )

* These data were automatically processed and therefore are not curated

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Halomonas fontilapidosi CECT 7341

Halomonas fontilapidosi CECT 7341

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