Daejeonella composti (KCTC 12638, LMG 23490, TR6-06T)

Name: Daejeonella composti (KCTC 12638, LMG 23490, TR6-06T)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133436

Type strain

Strain Designation TR6-06T, TR6-06

Culture col. no. KCTC 12638 LMG 23490 TR6-06T TR6-06

NCBI tax ID(s) 398052

Special Collections KCTC Literature strains

History KCTC <- ST Lee, KAIST

Links

Daejeonella composti TR6-06T is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from compost.

Gram-negative rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 290309

LMG 23490,KCTC 12638

@ref 20215

Last LPSN update 2026-05-29 08:38:05

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Daejeonella

Species Daejeonella composti

Full scientific name Daejeonella composti (Lee et al. 2009) García-López et al. 2020

Synonyms (1)

Pedobacter composti

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
28979	negative	1.4 µm	0.25 µm	rod-shaped
67771				rod-shaped
67771	negative

Pigmentation

28979

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
28979	positive	growth	25-37
28979	positive	optimum	30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH
28979	positive	optimum	7
28979	positive	growth	05-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
28979	aerobe
67771	aerobe

Spore formation

28979

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
28979	NaCl	positive	growth	0-1 %

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
28979	22599 ChEBI	arabinose	+	carbon source
28979	17234 ChEBI	glucose	+	carbon source
28979	17306 ChEBI	maltose	+	carbon source
28979	37684 ChEBI	mannose	+	carbon source
28979	506227 ChEBI	N-acetylglucosamine	+	carbon source
28979	17814 ChEBI	salicin	+	carbon source

Enzymes

@ref	Value	Activity	Ec
28979	acid phosphatase	+	3.1.3.2
28979	alkaline phosphatase	+	3.1.3.1
28979	catalase	+	1.11.1.6
28979	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
28979	compost
67771	From compost	Daejeon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB267720 (>99% sequence identity) for Daejeonella composti subclade from Microbeatlas

Aquatic Samples	1787
Soil Samples	702
Animal Samples	86
Plant Samples	118
Total Samples	2693

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
28979	Pedobacter composti gene for 16S rRNA, partial sequence, strain: TR6-06	AB267720	1430		398052

GC content

28979

GC-content (mol%)41.9

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.	Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M.	Front Microbiol	10.3389/fmicb.2019.02083	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25413	IJSEM 345 2009 ( DOI 10.1099/ijs.0.003061-0 , PubMed 19196776 )
#28979	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25413
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Daejeonella composti (KCTC 12638, LMG 23490, TR6-06T)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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