Name: Leptospira kmetyi WHOL1101
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133434

Type strain:

Species: Leptospira kmetyi

Strain Designation: WHOL1101, KIBejo-Iso9, Bejo-Iso9

Culture col. no.: WHOL1101 , KIBejo-Iso9

NCBI tax ID(s): 408139 (species)

Section

Leptospira kmetyi WHOL1101 is a motile bacterium that was isolated from soil.

motile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Leptospirales*
	Family	*Leptospiraceae*
	Genus	*Leptospira*
	Species	**Leptospira kmetyi**
	Full Scientific Name (LPSN)	Leptospira kmetyi Slack et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #28964]	Cell length	11.5 µm

[Ref.: #28964]	Cell width	0.2 µm

[Ref.: #28964]	Motility	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #28964]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB279549 (>99% sequence identity) for Leptospira from Microbeatlas

Aquatic Samples	158
Soil Samples	263
Animal Samples	64
Plant Samples	91
Total Samples	576

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #28964]	Leptospira kmetyi serovar Malaysia gene for 16S rRNA, partial sequence	AB279549	1331	GenBank	408140 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Leptospira kmetyi serovar Malaysia str. Bejo-Iso9	GCA_000243735	contig	GenBank	1049970 tax ID	*
[Ref.: #66792]	Leptospira kmetyi serovar Malaysia str. Bejo-Iso9	1049970.3	wgs	PATRIC	1049970 tax ID	*

[Ref.: #28964]

GC-content

36.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leptospira kmetyi serovar Malaysia str. Bejo-Iso9 PATRIC: 1049970.3
[Ref.: #69480]	motile	yes	88.123	yes
[Ref.: #69480]	flagellated	no	67.822	no
[Ref.: #69480]	gram-positive	no	98.436	no
[Ref.: #69480]	anaerobic	no	96.784	no
[Ref.: #69480]	aerobic	yes	81.928	no
[Ref.: #69480]	halophile	no	93.799	no
[Ref.: #69480]	spore-forming	no	91.178	no
[Ref.: #69480]	thermophile	no	92.515	no
[Ref.: #69480]	glucose-util	yes	66.217	no
[Ref.: #69480]	glucose-ferment	no	90.537	no

Availability in culture collections External links

[Ref.: #28964]

Culture collection no.

WHOL1101 , KIBejo-Iso9

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leptospira kmetyi sp. nov., isolated from an environmental source in Malaysia.	Slack AT, Khairani-Bejo S, Symonds ML, Dohnt MF, Galloway RL, Steigerwalt AG, Bahaman AR, Craig S, Harrower BJ, Smythe LD	Int J Syst Evol Microbiol	10.1099/ijs.0.002766-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28964

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25401 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#25401

IJSEM 705 2009 ( DOI 10.1099/ijs.0.002766-0 , PubMed 19329592 )

* These data were automatically processed and therefore are not curated

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Leptospira kmetyi serovar Malaysia str. Bejo-Iso9

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