Name: Pseudidiomarina marina PIM1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133427

Type strain:

Species: Pseudidiomarina marina

Strain Designation: PIM1

Culture col. no.: BCRC 17749, JCM 15083

Strain history: W. Y. Shieh PIM1.

NCBI tax ID(s): 502366 (species)

Section

Pseudidiomarina marina PIM1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Idiomarinaceae*
	Genus	*Pseudidiomarina*
	Species	**Pseudidiomarina marina**
	Full Scientific Name (PNU)	Pseudidiomarina marina Jean et al. 2009

Synonym

Idiomarina marina

Information on morphological and physiological properties Morphology

[Ref.: #28905]	Gram stain	negative
[Ref.: #28905]	Cell length	2.75 µm
[Ref.: #28905]	Cell width	0.7 µm
[Ref.: #28905]	Cell shape	rod-shaped
[Ref.: #28905]	Motility	no

[Ref.: #28905]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #28905]	growth	10-42 °C
[Ref.: #28905]	optimum	32.5 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #28905]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #28905]			optimum	7.5
[Ref.: #28905]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28905]

Oxygen tolerance

aerobe

[Ref.: #28905]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28905]		NaCl		growth	0.5-15	%
[Ref.: #28905]		NaCl		optimum	3.5	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28905]		gelatin ChEBI	+	carbon source
[Ref.: #28905]		leucine ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #28905]	acid phosphatase	+	3.1.3.2
[Ref.: #28905]	alkaline phosphatase	+	3.1.3.1
[Ref.: #28905]	catalase	+	1.11.1.6
[Ref.: #28905]	cytochrome oxidase	+	1.9.3.1
[Ref.: #28905]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #28905]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Shallow coastal seawater of An-Ping Harbour
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tainan
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU423908 (>99% sequence identity) for Pseudidiomarina marina from Microbeatlas

Aquatic Samples	80
Soil Samples	9
Animal Samples	19
Plant Samples	5
Total Samples	113

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #28905]	Pseudidiomarina marina strain PIM1 16S ribosomal RNA gene, partial sequence	EU423908	1465	GenBank	502366 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudidiomarina marina PIM1	GCA_003987045	contig	GenBank	502366 tax ID

[Ref.: #28905]	GC-content	46.6 mol%
[Ref.: #67770]	GC-content	47.17 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	46.6 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #28905]

Culture collection no.

BCRC 17749, JCM 15083

[Ref.: #20218]

Associated Passport(s) in StrainInfo

836745, 836746

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudidiomarina marina sp. nov. and Pseudidiomarina tainanensis sp. nov. and reclassification of Idiomarina homiensis and Idiomarina salinarum as Pseudidiomarina homiensis comb. nov. and Pseudidiomarina salinarum comb. nov., respectively.	Jean WD, Leu TY, Lee CY, Chu TJ, Lin SY, Shieh WY	Int J Syst Evol Microbiol	10.1099/ijs.0.001180-0	2009	*
Phylogeny	Idiomarina andamanensis sp. nov., an alkalitolerant bacterium isolated from Andaman Sea water.	Zachariah S, Das SK	Antonie Van Leeuwenhoek	10.1007/s10482-017-0908-5	2017	*
Phylogeny	Comparative analysis of 16S rRNA signature sequences of the genus Idiomarina and Idiomarina woesei sp. nov., a novel marine bacterium isolated from the Andaman Sea.	Poddar A, Lepcha RT, Mukherjee D, Bhattacharyya D, Das SK	Res Microbiol	10.1016/j.resmic.2014.07.008	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#28905

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25344 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#25344

IJSEM 53 2009 ( DOI 10.1099/ijs.0.001180-0 , PubMed 19126723 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pseudidiomarina marina in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF