Sinomonas flava (LMG 24447, KCTC 19388, CCTCC AB 207194)

Name: Sinomonas flava (LMG 24447, KCTC 19388, CCTCC AB 207194)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133423

Type strain

Strain Designation CW108

Culture col. no. LMG 24447 KCTC 19388 CCTCC AB 207194 CW108 JCM 16034

NCBI tax ID(s) 496857

Special Collections JCM KCTC Literature strains

History JCM <-- LMG 24447 <-- Y. Zhou et al. CW 108.

Links

Sinomonas flava CW108 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from soil.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 323283

LMG 24447,KCTC 19388,JCM 16034

@ref 20215

Last LPSN update 2026-05-29 08:38:05

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Sinomonas

Species Sinomonas flava

Full scientific name Sinomonas flava Zhou et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
28893	positive	3.1 µm	0.7 µm	rod-shaped
125439	positive					90.74

Pigmentation

28893

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
28893	positive	growth	15-42
28893	positive	optimum	33.5
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
28893	positive	optimum	7
28893	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
28893	aerobe
125439	obligate aerobe	98.177

Halophily

@ref	Salt	Growth	Tested relation	Concentration
28893	NaCl	positive	growth	0-3 %
28893	NaCl	positive	optimum	1.5 %

Observation

67770

Observationquinones: MK-9(H₂), MK-8(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
28893	16808 ChEBI	2-dehydro-D-gluconate	+	carbon source
28893	17057 ChEBI	cellobiose	+	carbon source
28893	4853 ChEBI	esculin	+	hydrolysis
28893	28757 ChEBI	fructose	+	carbon source
28893	17234 ChEBI	glucose	+	carbon source
28893	17754 ChEBI	glycerol	+	carbon source
28893	17306 ChEBI	maltose	+	carbon source
28893	29864 ChEBI	mannitol	+	carbon source
28893	37684 ChEBI	mannose	+	carbon source
28893	17632 ChEBI	nitrate	+	reduction
28893	33942 ChEBI	ribose	+	carbon source
28893	30911 ChEBI	sorbitol	+	carbon source
28893	17992 ChEBI	sucrose	+	carbon source
28893	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
28893	catalase	+	1.11.1.6
28893	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
28893	soil
67770	Forest soil	Anhui Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU370704 (>99% sequence identity) for Sinomonas from Microbeatlas

Aquatic Samples	434
Soil Samples	1972
Animal Samples	554
Plant Samples	155
Total Samples	3115

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953187v1 assembly for Sinomonas flava JCM 16034	scaffold	GCA_039531875	496857	62.43

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
28893	Sinomonas flava strain CW 108 16S ribosomal RNA gene, partial sequence	EU370704	1385		496857

GC content

@ref	GC-content (mol%)	Method
28893	71.1
67770	71.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953187v1 assembly for Sinomonas flava JCM 16034
NCBI: GCA_039531875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.18	no
125439	gram_stain	BacteriaNetⓘ	positive	90.74	no
125439	spore_formation	BacteriaNetⓘ	no	88.26	no
125439	motility	BacteriaNetⓘ	no	70.65	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of Sinomonas flava gen. nov., sp. nov., and description of Sinomonas atrocyanea comb. nov. to accommodate Arthrobacter atrocyaneus.	Zhou Y, Wei W, Wang X, Lai R	Int J Syst Evol Microbiol	10.1099/ijs.0.000695-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25333	IJSEM 259 2009 ( DOI 10.1099/ijs.0.000695-0 , PubMed 19196763 )
#28893	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25333
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Sinomonas flava (LMG 24447, KCTC 19388, CCTCC AB 207194)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039531875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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