Thalassomonas actiniarum (MBIC 08328, NCIMB 14418, NBRC 104231)

Name: Thalassomonas actiniarum (MBIC 08328, NCIMB 14418, NBRC 104231)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133421

Type strain

Strain Designation A5K-106

Culture col. no. MBIC 08328 NCIMB 14418 NBRC 104231 A5K-106

NCBI tax ID(s) 485447

Special Collections Literature strains

Links

Thalassomonas actiniarum A5K-106 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from marine animals.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133398

NBRC 104231,NCIMB 14418

@ref 20215

Last LPSN update 2025-12-16 10:01:47

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Colwelliaceae

Genus Thalassomonas

Species Thalassomonas actiniarum

Full scientific name Thalassomonas actiniarum Hosoya et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
28887	negative	1.5 µm	0.5 µm	rod-shaped
125438	negative				99.5
125439	negative				96.3

Pigmentation

28887

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
28887	positive	optimum	27.5	mesophilic

Culture pH

@ref	Ability	Type	PH
28887	positive	optimum	8
28887	positive	growth	6.5-8

Physiology and metabolism

Oxygen tolerance

28887

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		96.8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
28887	17057 ChEBI	cellobiose	+	carbon source
28887	4853 ChEBI	esculin	+	hydrolysis
28887	17234 ChEBI	glucose	+	carbon source
28887	28087 ChEBI	glycogen	+	carbon source
28887	17306 ChEBI	maltose	+	carbon source
28887	506227 ChEBI	N-acetylglucosamine	+	carbon source
28887	17632 ChEBI	nitrate	+	reduction
28887	17814 ChEBI	salicin	+	carbon source
28887	17992 ChEBI	sucrose	+	carbon source
28887	27082 ChEBI	trehalose	+	carbon source
28887	53424 ChEBI	tween 20	+	carbon source
28887	53423 ChEBI	tween 40	+	carbon source
28887	53425 ChEBI	tween 60	+	carbon source
28887	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
28887	acid phosphatase	+	3.1.3.2
28887	alkaline phosphatase	+	3.1.3.1
28887	catalase	+	1.11.1.6
28887	cytochrome oxidase	+	1.9.3.1
28887	gelatinase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	quinate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	Entner Doudoroff pathway	100	10 of 10
66794	methylglyoxal degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	butanoate fermentation	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	gluconeogenesis	100	8 of 8
66794	ubiquinone biosynthesis	100	7 of 7
66794	tetrahydrofolate metabolism	100	14 of 14
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	denitrification	100	2 of 2
66794	cellulose degradation	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	threonine metabolism	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	purine metabolism	85.11	80 of 94
66794	NAD metabolism	83.33	15 of 18
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	proline metabolism	81.82	9 of 11
66794	pentose phosphate pathway	81.82	9 of 11
66794	tryptophan metabolism	81.58	31 of 38
66794	propionate fermentation	80	8 of 10
66794	glycine betaine biosynthesis	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	pyrimidine metabolism	77.78	35 of 45
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	lipid metabolism	77.42	24 of 31
66794	methionine metabolism	76.92	20 of 26
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	vitamin B6 metabolism	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	glutathione metabolism	71.43	10 of 14
66794	citric acid cycle	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	alanine metabolism	68.97	20 of 29
66794	non-pathway related	68.42	26 of 38
66794	octane oxidation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	peptidoglycan biosynthesis	66.67	10 of 15
66794	ketogluconate metabolism	62.5	5 of 8
66794	cysteine metabolism	61.11	11 of 18
66794	gallate degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	aclacinomycin biosynthesis	57.14	4 of 7
66794	degradation of sugar alcohols	56.25	9 of 16
66794	allantoin degradation	55.56	5 of 9
66794	phenol degradation	55	11 of 20
66794	urea cycle	53.85	7 of 13
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	lysine metabolism	52.38	22 of 42
66794	cyclohexanol degradation	50	2 of 4
66794	ascorbate metabolism	50	11 of 22
66794	pantothenate biosynthesis	50	3 of 6
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	starch degradation	50	5 of 10
66794	selenocysteine biosynthesis	50	3 of 6
66794	resorcinol degradation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	arachidonic acid metabolism	50	9 of 18
66794	glycine metabolism	50	5 of 10
66794	sulfate reduction	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	d-xylose degradation	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	oxidative phosphorylation	43.96	40 of 91
66794	D-cycloserine biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	degradation of pentoses	39.29	11 of 28
66794	degradation of hexoses	38.89	7 of 18
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	carotenoid biosynthesis	36.36	8 of 22
66794	polyamine pathway	34.78	8 of 23
66794	IAA biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	degradation of sugar acids	32	8 of 25
66794	coenzyme M biosynthesis	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	alginate biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	toluene degradation	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	chlorophyll metabolism	22.22	4 of 18
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	vitamin B12 metabolism	20.59	7 of 34

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	-	-

Isolation

28887

Sample typemarine animals

Taxonmaps

69479

Global distribution of 16S sequence AB369380 (>99% sequence identity) for Thalassomonas actiniarum from Microbeatlas

Aquatic Samples	116
Soil Samples	2
Animal Samples	2
Plant Samples
Total Samples	120

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM94897v2 assembly for Thalassomonas actiniarum A5K-106	complete	GCA_000948975	485447.8	2630968886	485447	89.81

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
28887	Thalassomonas actiniarum gene for 16S ribosomal RNA, partial sequence	AB369380	1462		485447
124043	Thalassomonas actiniarum gene for 16S rRNA, partial sequence, strain: NBRC 104231.	AB682156	1465		485447

GC content

28887

GC-content (mol%)47

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thalassomonas actiniarum A5K-106
NCBI: GCA_000948975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.80	no
125439	motility	BacteriaNetⓘ	yes	76.50	no
125439	gram_stain	BacteriaNetⓘ	negative	96.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	67.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thalassomonas actiniarum A5K-106
NCBI: GCA_000948975.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	yes
125438	anaerobic	anaerobicⓘ	no	96.89	no
125438	aerobic	aerobicⓘ	yes	68.13	no
125438	spore-forming	spore-formingⓘ	no	85.85	no
125438	thermophilic	thermophileⓘ	no	95.31	yes
125438	flagellated	motile2+ⓘ	yes	87.23	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thalassomonas actiniarum sp. nov. and Thalassomonas haliotis sp. nov., isolated from marine animals.	Hosoya S, Adachi K, Kasai H	Int J Syst Evol Microbiol	10.1099/ijs.0.000539-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25327	IJSEM 686 2009 ( DOI 10.1099/ijs.0.000539-0 , PubMed 19329588 )
#28887	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25327
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Thalassomonas actiniarum (MBIC 08328, NCIMB 14418, NBRC 104231)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000948975

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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