Aliiglaciecola lipolytica (CGMCC 1.7001, JCM 15139, E3)

Name: Aliiglaciecola lipolytica (CGMCC 1.7001, JCM 15139, E3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133419

Type strain

Strain Designation E3

Culture col. no. CGMCC 1.7001 JCM 15139 E3

NCBI tax ID(s) 477689

Special Collections JCM Literature strains

History Z.-P. Liu E3.

Links

Aliiglaciecola lipolytica E3 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27915

JCM 15139

@ref 20215

Last LPSN update 2026-02-09 11:31:56

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Aliiglaciecola

Species Aliiglaciecola lipolytica

Full scientific name Aliiglaciecola lipolytica (Chen et al. 2009) Jean et al. 2013

Synonyms (1)

Glaciecola lipolytica

BacDive ID	Other strains from **Aliiglaciecola lipolytica** (1)	Type strain
133904	A. lipolytica

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Motility	Confidence
28884	negative	1.0-2.5 µm	rod-shaped
125439	negative				97.2

Pigmentation

28884

Productionno

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
28884	positive	growth	04-36
28884	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
28884	positive	optimum	7.6
28884	positive	growth	07-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
28884	aerobe
125439	obligate aerobe	99.3

Spore formation

@ref	Spore formation	Confidence
28884
125439		96.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30838	NaCl	positive	growth	0-1 %
28884	NaCl	positive	optimum	2 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
28884	16808 ChEBI	2-dehydro-D-gluconate	+	carbon source
28884	17057 ChEBI	cellobiose	+	carbon source
28884	4853 ChEBI	esculin	+	hydrolysis
28884	33984 ChEBI	fucose	+	carbon source
28884	28260 ChEBI	galactose	+	carbon source
28884	5291 ChEBI	gelatin	+	carbon source
28884	17234 ChEBI	glucose	+	carbon source
28884	17716 ChEBI	lactose	+	carbon source
28884	25017 ChEBI	leucine	+	carbon source
28884	17306 ChEBI	maltose	+	carbon source
28884	29864 ChEBI	mannitol	+	carbon source
28884	28053 ChEBI	melibiose	+	carbon source
28884	506227 ChEBI	N-acetylglucosamine	+	carbon source
28884	17632 ChEBI	nitrate	+	reduction
28884	16634 ChEBI	raffinose	+	carbon source
28884	17814 ChEBI	salicin	+	carbon source
28884	53258 ChEBI	sodium citrate	+	carbon source
28884	17992 ChEBI	sucrose	+	carbon source
28884	27082 ChEBI	trehalose	+	carbon source
28884	53424 ChEBI	tween 20	+	carbon source
28884	53423 ChEBI	tween 40	+	carbon source
28884	53425 ChEBI	tween 60	+	carbon source
28884	53426 ChEBI	tween 80	+	carbon source
28884	16199 ChEBI	urea	+	carbon source
28884	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
28884	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
28884	acid phosphatase	+	3.1.3.2
28884	alkaline phosphatase	+	3.1.3.1
28884	alpha-galactosidase	+	3.2.1.22
28884	catalase	+	1.11.1.6
28884	cytochrome oxidase	+	1.9.3.1
28884	gelatinase	+
28884	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
28884	seawater
67770	Coastal surface seawater near Tianjin City	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU183316 (>99% sequence identity) for Aliiglaciecola lipolytica from Microbeatlas

Aquatic Samples	216
Soil Samples	1
Animal Samples	130
Plant Samples	1
Total Samples	348

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM31497v1 assembly for Aliiglaciecola lipolytica E3	contig	GCA_000314975	1127673.3	2531839189	1127673	64.15

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
28884	Glaciecola lipolytica strain E3 16S ribosomal RNA gene, partial sequence	EU183316	1425		1127673

GC content

@ref	GC-content (mol%)	Method
28884	40.8
67770	40.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aliiglaciecola lipolytica E3
NCBI: GCA_000314975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.70	no
125439	motility	BacteriaNetⓘ	yes	54.20	no
125439	gram_stain	BacteriaNetⓘ	negative	97.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Gene cloning and expression of a glucoside 3-dehydrogenase from Sphingobacterium faecium ZJF-D6, and used it to produce N-p-nitrophenyl-3-ketovalidamine.	Zhang JF, Chen WQ, Chen H.	World J Microbiol Biotechnol	10.1007/s11274-016-2187-0	2017
Enzymology	Identification and Characterization of a beta-N-Acetylhexosaminidase with a Biosynthetic Activity from the Marine Bacterium Paraglaciecola hydrolytica S66^T.	Visnapuu T, Teze D, Kjeldsen C, Lie A, Duus JO, Andre-Miral C, Pedersen LH, Stougaard P, Svensson B.	Int J Mol Sci	10.3390/ijms21020417	2020
Genetics	Mixed transmission modes and dynamic genome evolution in an obligate animal-bacterial symbiosis.	Russell SL, Corbett-Detig RB, Cavanaugh CM.	ISME J	10.1038/ismej.2017.10	2017
Genetics	Networking in microbes: conjugative elements and plasmids in the genus Alteromonas.	Lopez-Perez M, Ramon-Marco N, Rodriguez-Valera F.	BMC Genomics	10.1186/s12864-016-3461-0	2017
Phylogeny	Reclassification of [Glaciecola] lipolytica and [Aestuariibacter] litoralis in Aliiglaciecola gen. nov., as Aliiglaciecola lipolytica comb. nov. and Aliiglaciecola litoralis comb. nov., respectively.	Jean WD, Hsu CY, Huang SP, Chen JS, Lin S, Su MH, Shieh WY	Int J Syst Evol Microbiol	10.1099/ijs.0.045625-0	2013
Phylogeny	Aliiglaciecola coringensis sp. nov., isolated from a water sample collected from mangrove forest in Coringa, Andhra Pradesh, India.	Gupta V, Sharma G, Srinivas TN, Anil Kumar P	Antonie Van Leeuwenhoek	10.1007/s10482-014-0279-0	2014
Phylogeny	Glaciecola lipolytica sp. nov., isolated from seawater near Tianjin city, China.	Chen LP, Xu HY, Fu SZ, Fan HX, Liu YH, Liu SJ, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.000489-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25324	IJSEM 73 2009 ( DOI 10.1099/ijs.0.000489-0 , PubMed 19126727 )
#27168	IJSEM 2859 2013 ( DOI 10.1099/ijs.0.045625-0 , PubMed 23315410 )
#28884	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25324
#30838	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27168
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aliiglaciecola lipolytica (CGMCC 1.7001, JCM 15139, E3)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000314975

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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