Name: Aliiglaciecola lipolytica E3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133419

Type strain:

Species: Aliiglaciecola lipolytica

Strain Designation: E3

Culture col. no.: CGMCC 1.7001, JCM 15139

Strain history: Z.-P. Liu E3.

NCBI tax ID(s): 477689 (species)

Other strains from Aliiglaciecola lipolytica

A. lipolytica

Section

Aliiglaciecola lipolytica E3 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Aliiglaciecola*
	Species	**Aliiglaciecola lipolytica**
	Full Scientific Name (LPSN)	Aliiglaciecola lipolytica (Chen et al. 2009) Jean et al. 2013

Synonym

Glaciecola lipolytica

Information on morphological and physiological properties Morphology

[Ref.: #28884]	Gram stain	negative

[Ref.: #28884]	Cell length	1.0-2.5 µm

[Ref.: #28884]	Cell shape	rod-shaped

[Ref.: #28884]	Motility	yes

[Ref.: #28884]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #28884]	growth	04-36 °C
[Ref.: #28884]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #28884]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #28884]			optimum	7.6
[Ref.: #28884]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28884]

Oxygen tolerance

aerobe

[Ref.: #28884]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30838]		NaCl		growth	0-1	%
[Ref.: #28884]		NaCl		optimum	2	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28884]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #28884]	cellobiose ChEBI	+	carbon source
[Ref.: #28884]	esculin ChEBI	+	hydrolysis
[Ref.: #28884]	fucose ChEBI	+	carbon source
[Ref.: #28884]	galactose ChEBI	+	carbon source
[Ref.: #28884]	gelatin ChEBI	+	carbon source
[Ref.: #28884]	glucose ChEBI	+	carbon source
[Ref.: #28884]	lactose ChEBI	+	carbon source
[Ref.: #28884]	leucine ChEBI	+	carbon source
[Ref.: #28884]	maltose ChEBI	+	carbon source
[Ref.: #28884]	mannitol ChEBI	+	carbon source
[Ref.: #28884]	melibiose ChEBI	+	carbon source
[Ref.: #28884]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #28884]	nitrate ChEBI	+	reduction
[Ref.: #28884]	raffinose ChEBI	+	carbon source
[Ref.: #28884]	salicin ChEBI	+	carbon source
[Ref.: #28884]	sodium citrate ChEBI	+	carbon source
[Ref.: #28884]	sucrose ChEBI	+	carbon source
[Ref.: #28884]	trehalose ChEBI	+	carbon source
[Ref.: #28884]	tween 20 ChEBI	+	carbon source
[Ref.: #28884]	tween 40 ChEBI	+	carbon source
[Ref.: #28884]	tween 60 ChEBI	+	carbon source
[Ref.: #28884]	tween 80 ChEBI	+	carbon source
[Ref.: #28884]	urea ChEBI	+	carbon source
[Ref.: #28884]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #28884]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #28884]	acid phosphatase	+	3.1.3.2
[Ref.: #28884]	alkaline phosphatase	+	3.1.3.1
[Ref.: #28884]	alpha-galactosidase	+	3.2.1.22
[Ref.: #28884]	catalase	+	1.11.1.6
[Ref.: #28884]	cytochrome oxidase	+	1.9.3.1
[Ref.: #28884]	gelatinase	+
[Ref.: #28884]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #28884]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Coastal surface seawater near Tianjin City
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU183316 (>99% sequence identity) for Aliiglaciecola lipolytica from Microbeatlas

Aquatic Samples	216
Soil Samples	1
Animal Samples	130
Plant Samples	1
Total Samples	348

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #28884]	Glaciecola lipolytica strain E3 16S ribosomal RNA gene, partial sequence	EU183316	1425	GenBank	1127673 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aliiglaciecola lipolytica E3	GCA_000314975	contig	GenBank	1127673 tax ID	*
[Ref.: #66792]	Aliiglaciecola lipolytica E3	2531839189	draft	JGI IMG/M	1127673 tax ID	*

[Ref.: #28884]	GC-content	40.8 mol%
[Ref.: #67770]	GC-content	40.8 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #28884]

Culture collection no.

CGMCC 1.7001, JCM 15139

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliiglaciecola coringensis sp. nov., isolated from a water sample collected from mangrove forest in Coringa, Andhra Pradesh, India.	Gupta V, Sharma G, Srinivas TN, Anil Kumar P	Antonie Van Leeuwenhoek	10.1007/s10482-014-0279-0	2014	*
Phylogeny	Reclassification of [Glaciecola] lipolytica and [Aestuariibacter] litoralis in Aliiglaciecola gen. nov., as Aliiglaciecola lipolytica comb. nov. and Aliiglaciecola litoralis comb. nov., respectively.	Jean WD, Hsu CY, Huang SP, Chen JS, Lin S, Su MH, Shieh WY	Int J Syst Evol Microbiol	10.1099/ijs.0.045625-0	2013	*
Phylogeny	Glaciecola lipolytica sp. nov., isolated from seawater near Tianjin city, China.	Chen LP, Xu HY, Fu SZ, Fan HX, Liu YH, Liu SJ, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.000489-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28884

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25324 (see below)

#30838

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#25324

IJSEM 73 2009 ( DOI 10.1099/ijs.0.000489-0 , PubMed 19126727 )

#27168

IJSEM 2859 2013 ( DOI 10.1099/ijs.0.045625-0 , PubMed 23315410 )

* These data were automatically processed and therefore are not curated

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