Pseudomonas canadensis (LMG 28499, DOAB 798, 2-92)

Name: Pseudomonas canadensis (LMG 28499, DOAB 798, 2-92)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133410

Type strain

Strain Designation 2-92

Culture col. no. LMG 28499 DOAB 798 2-92

NCBI tax ID(s) 915099

Special Collections Literature strains

Links

Pseudomonas canadensis 2-92 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from Soil samples from a corn-alfalfa rotation plot.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 411683

LMG 28499,CCUG 66298,CFBP 8481

@ref 20215

Last LPSN update 2026-02-09 11:31:56

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas canadensis

Full scientific name Pseudomonas canadensis Tambong et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
25275	negative	2.3 µm	0.5 µm	rod-shaped	polar
125438						93.326
125438	negative					99
125439	negative					90.8

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25275	4 mm	white-yellowish	circular	2 days	King’s B agar (KB, Sigma-Aldrich)

Pigmentation

@ref	Production	Name
25275		fluorescent pigment

Culture and growth conditions

Culture medium

@ref	Name	Growth
25275	King’s B agar (KB, Sigma-Aldrich)
25275	LB (Luria-Bertani) MEDIUM

Culture temp

@ref	Growth	Type	Temperature (°C)
25275	positive	growth	4
25275	positive	optimum	30
25275	negative	growth	40

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25275	aerobe
125438	aerobe	93.708
125439	obligate aerobe	96.3

Spore formation

@ref	Spore formation	Confidence
25275
125439		97.1

Halophily

@ref	Salt	Tested relation	Concentration
25275	NaCl	maximum	4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25275	16651 ChEBI	(S)-lactate	+	assimilation
25275	16997 ChEBI	1,2-propandiol	-	assimilation
25275	30916 ChEBI	2-oxoglutarate	+	assimilation
25275	18240 ChEBI	4-hydroxy-L-proline	+	assimilation
25275	30089 ChEBI	acetate	+	assimilation
25275	16335 ChEBI	adenosine	+	assimilation
25275	17128 ChEBI	adipate	+	assimilation
25275	17925 ChEBI	alpha-D-glucose	+	assimilation
25275	73673 ChEBI	alpha-hydroxyglutarate-gamma-lactone	-	assimilation
25275	8295 ChEBI	beta-hydroxybutyrate	+	assimilation
25275	73706 ChEBI	bromosuccinate	+	assimilation
25275	17126 ChEBI	carnitine	+	assimilation
25275	16947 ChEBI	citrate	+	assimilation
25275	15570 ChEBI	D-alanine	+	assimilation
25275	18333 ChEBI	D-arabitol	+	assimilation
25275	15824 ChEBI	D-fructose	+	assimilation
25275	78697 ChEBI	D-fructose 6-phosphate	-	assimilation
25275	15895 ChEBI	D-galactonic acid lactone	+	assimilation
25275	12936 ChEBI	D-galactose	+	assimilation
25275	30612 ChEBI	D-glucarate	+	assimilation
25275	8391 ChEBI	D-gluconate	+	assimilation
25275	17315 ChEBI	D-glucosamine	+	assimilation
25275	17784 ChEBI	D-glucosaminic acid	+	assimilation
25275	14314 ChEBI	D-glucose 6-phosphate	-	assimilation
25275	16899 ChEBI	D-mannitol	+	assimilation
25275	16024 ChEBI	D-mannose	+	assimilation
25275	27689 ChEBI	decanoate	+	assimilation
25275	17113 ChEBI	erythritol	+	assimilation
25275	15740 ChEBI	formate	-	assimilation
25275	29806 ChEBI	fumarate	+	assimilation
25275	16537 ChEBI	galactarate	+	assimilation
25275	16865 ChEBI	gamma-aminobutyric acid	+	assimilation
25275	17754 ChEBI	glycerol	+	assimilation
25275	70744 ChEBI	glycine-proline	-	assimilation
25275	17120 ChEBI	hexanoate	+	assimilation
25275	17596 ChEBI	inosine	+	assimilation
25275	17240 ChEBI	itaconate	+	assimilation
25275	16977 ChEBI	L-alanine	+	assimilation
25275	73786 ChEBI	L-alanylglycine	+	assimilation
25275	30849 ChEBI	L-arabinose	+	assimilation
25275	16467 ChEBI	L-arginine	+	assimilation
25275	17196 ChEBI	L-asparagine	+	assimilation
25275	29991 ChEBI	L-aspartate	+	assimilation
25275	29985 ChEBI	L-glutamate	+	assimilation
25275	18050 ChEBI	L-glutamine	+	assimilation
25275	17191 ChEBI	L-isoleucine	+	assimilation
25275	15603 ChEBI	L-leucine	+	assimilation
25275	15589 ChEBI	L-malate	+	assimilation
25275	15729 ChEBI	L-ornithine	+	assimilation
25275	17295 ChEBI	L-phenylalanine	+	assimilation
25275	17203 ChEBI	L-proline	+	assimilation
25275	18183 ChEBI	L-pyroglutamic acid	+	assimilation
25275	62345 ChEBI	L-rhamnose	+	assimilation
25275	17115 ChEBI	L-serine	+	assimilation
25275	16414 ChEBI	L-valine	+	assimilation
25275	17716 ChEBI	lactose	-	assimilation
25275	25115 ChEBI	malate	+	assimilation
25275	15792 ChEBI	malonate	+	assimilation
25275	17306 ChEBI	maltose	-	assimilation
25275	28053 ChEBI	melibiose	+	assimilation
25275	51850 ChEBI	methyl pyruvate	+	assimilation
25275	75146 ChEBI	monomethyl succinate	+	assimilation
25275	17268 ChEBI	myo-inositol	+	assimilation
25275	8006 ChEBI	N-acetyl-D-glucosamine	+	assimilation
25275	50048 ChEBI	phenylethylamine	-	assimilation
25275	32032 ChEBI	potassium gluconate	+	assimilation
25275	17272 ChEBI	propionate	+	assimilation
25275	17148 ChEBI	putrescine	+	assimilation
25275	15361 ChEBI	pyruvate	+	assimilation
25275	26490 ChEBI	quinate	+	assimilation
25275	15963 ChEBI	ribitol	+	assimilation
25275	41865 ChEBI	sebacic acid	-	assimilation
25275	53258 ChEBI	sodium citrate	+	assimilation
25275	143136 ChEBI	succinamate	+	assimilation
25275	30031 ChEBI	succinate	+	assimilation
25275	17992 ChEBI	sucrose	+	assimilation
25275	27082 ChEBI	trehalose	+	assimilation
25275	53424 ChEBI	tween 20	+	assimilation
25275	53423 ChEBI	tween 40	-	assimilation
25275	53426 ChEBI	tween 80	-	assimilation
25275	17151 ChEBI	xylitol	+	assimilation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25275	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
25275	arginine dihydrolase	+	3.5.3.6
25275	beta-galactosidase	-	3.2.1.23
25275	beta-glucosidase	-	3.2.1.21
25275	cytochrome oxidase	+	1.9.3.1
25275	gelatinase	+
25275	tryptophan deaminase	+	4.1.99.1
25275	urease	+	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

25275

Fatty acid	Percentage
C16:0	31.3
C16:1ω6c / C16:1ω7c	19.9
C18:1ω7c / C18:1ω6c	14.4
C17:0 cyclo	9.2
C12:0 2OH	7.7
C12:0 3OH	6.1
C10:0 3OH	3.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
25275	Soil samples from a corn-alfalfa rotation plot	Woodslee, Ontario	Canada	CAN	North America	42	-82 42/-82	King’s B agar (KB, Sigma-Aldrich)	2 days	28	serial dilution method

Taxonmaps

69479

Global distribution of 16S sequence HQ403142 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	1631
Soil Samples	874
Animal Samples	3216
Plant Samples	2451
Total Samples	8172

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Pseudomonas_sp_2-92_R01 assembly for Pseudomonas canadensis 2-92	scaffold	GCA_000503215	915099.3	2582580912	915099	72.19

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25275	Pseudomonas canadensis strain 2-92 16S ribosomal RNA gene, partial sequence	HQ403142	1415		915099

GC content

@ref	GC-content (mol%)	Method
25275	60.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas canadensis Feb-92
NCBI: GCA_000503215

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.10	no
125439	motility	BacteriaNetⓘ	yes	80.90	no
125439	gram_stain	BacteriaNetⓘ	negative	90.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas canadensis 2-92
NCBI: GCA_000503215.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	yes
125438	anaerobic	anaerobicⓘ	no	98.91	yes
125438	aerobic	aerobicⓘ	yes	93.71	no
125438	spore-forming	spore-formingⓘ	no	87.64	yes
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	93.33	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas canadensis sp. nov., a biological control agent isolated from a field plot under long-term mineral fertilization.	Tambong JT, Xu R, Bromfield ESP	Int J Syst Evol Microbiol	10.1099/ijsem.0.001698	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25275	J. T. X. Tambong, R.,Bromfield, E. S. P.: Pseudomonas canadensis sp. nov., a biological control agent isolated from a field plot under long-term mineral fertilization. IJSEM 67: 889 - 895 2017 ( DOI 10.1099/ijsem.0.001698 , PubMed 27902304 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas canadensis (LMG 28499, DOAB 798, 2-92)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000503215

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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