Name: Colwellia marinimaniae MTCD1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133405

Type strain:

Species: Colwellia marinimaniae

Strain Designation: MTCD1

Culture col. no.: ATCC TSD-5, JCM 30270

NCBI tax ID(s): 1513592 (species)

Section

Colwellia marinimaniae MTCD1 is an anaerobe, halophilic, chemoorganotroph bacterium that forms circular colonies and was isolated from decaying Hirondellea gigas amphipod from 10918 m depth.

colony-forming
Gram-negative
motile
rod-shaped
anaerobe
chemoorganotroph
halophilic
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Colwelliaceae*
	Genus	*Colwellia*
	Species	**Colwellia marinimaniae**
	Full Scientific Name (LPSN)	Colwellia marinimaniae Kusube et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25276]	Gram stain	negative

[Ref.: #25276]	Cell length	0.8-1.2 µm

[Ref.: #25276]	Cell width	0.4-0.5 µm

[Ref.: #25276]	Cell shape	rod-shaped

[Ref.: #25276]	Motility	yes

[Ref.: #25276]	Colony size	0.5-1.0 mm
[Ref.: #25276]	Colony color	light beige
[Ref.: #25276]	Colony shape	circular
[Ref.: #25276]	Incubation period	14 days
[Ref.: #25276]	Cultivation medium used	Marine Medium 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25276]

Culture medium

Marine Medium 2216

[Ref.: #25276]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25276]			optimum	6 °C

[Ref.: #25276]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25276]

Oxygen tolerance

anaerobe

[Ref.: #25276]

Nutrition type

chemoorganotroph

[Ref.: #25276]

Halophily / tolerance level

halophilic

[Ref.: #25276]

Observation

piezophilic

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25276]	casein	-	hydrolysis
[Ref.: #25276]	cellobiose ChEBI	-	builds acid from
[Ref.: #25276]	cellobiose ChEBI	+	carbon source
[Ref.: #25276]	D-xylose ChEBI	-	builds acid from
[Ref.: #25276]	D-xylose ChEBI	+	carbon source
[Ref.: #25276]	gelatin ChEBI	+	hydrolysis
[Ref.: #25276]	glycerol ChEBI	-	builds acid from
[Ref.: #25276]	glycerol ChEBI	+	carbon source
[Ref.: #25276]	maltose ChEBI	-	builds acid from
[Ref.: #25276]	maltose ChEBI	+	carbon source
[Ref.: #25276]	mannose ChEBI	-	builds acid from
[Ref.: #25276]	mannose ChEBI	+	carbon source
[Ref.: #25276]	nitrate ChEBI	-	reduction
[Ref.: #25276]	nitrite ChEBI	-	reduction
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25276]		hydrogen sulfide ChEBI	no
[Ref.: #25276]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #25276]	amylase	-
[Ref.: #25276]	catalase	+	1.11.1.6
[Ref.: #25276]	chitinase	-	3.2.1.14
[Ref.: #25276]	cytochrome oxidase	+	1.9.3.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25276]

Fatty acid	Percentage
C16:1ω7c	47
C16:0	18
C22:6(DHA)	17
C14:1	8
C18:0	3
C18:1ω7c	3
C20:5ω3(EPA)	2
C14:0	1
C15:0	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25276]	Sample type/isolated from	decaying Hirondellea gigas amphipod from 10918 m depth
[Ref.: #25276]	Geographic location (country and/or sea, region)	Challenger Deep, Mariana Trench, Pacific Ocean
[Ref.: #25276]	Geographic location	11.0000°/142.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Host	#Arthropoda	#Crustacea
#Host	#Other	#Decomposing animal

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB971664 (>99% sequence identity) for Colwellia marinimaniae subclade from Microbeatlas

Aquatic Samples	164
Soil Samples
Animal Samples	21
Plant Samples
Total Samples	185

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25276]	Colwellia marinimaniae gene for 16S ribosomal RNA, partial sequence	AB971664	1423	GenBank	1513592 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Colwellia marinimaniae MTCD1	GCA_002207865	contig	GenBank	1513592 tax ID	*
[Ref.: #66792]	Colwellia marinimaniae MTCD1	2791355059	draft	JGI IMG/M	1513592 tax ID	*

[Ref.: #25276]

GC-content

48.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25276]

Culture collection no.

ATCC TSD-5, JCM 30270

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Colwellia marinimaniae sp. nov., a hyperpiezophilic species isolated from an amphipod within the Challenger Deep, Mariana Trench.	Kusube M, Kyaw TS, Tanikawa K, Chastain RA, Hardy KM, Cameron J, Bartlett DH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001671	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25276

M. K. Kusube, T. S.,Tanikawa, K.,Chastain, R. A.,Hardy, K. M.,Cameron, J.,Bartlett, D. H.: Colwellia marinimaniae sp. nov., a hyperpiezophilic species isolated from an amphipod within the Challenger Deep, Mariana Trench. IJSEM 67: 824 - 831 2017 ( DOI 10.1099/ijsem.0.001671 , PubMed 27902293 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Colwellia marinimaniae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF