Name: Lysobacter humi FJY8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133401

Type strain:

Species: Lysobacter humi

Strain Designation: FJY8

Culture col. no.: KCTC 42810, JCM 31019

Strain history: T. Seo; Dept. of Life Sci., Dongguk Univ., South Korea; FJY8.

NCBI tax ID(s): 1720254 (species)

Section

Lysobacter humi FJY8 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from soil sample from arid area.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Lysobacter*
	Species	**Lysobacter humi**
	Full Scientific Name (LPSN)	Lysobacter humi Lee et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25266]	Gram stain	negative

[Ref.: #25266]	Cell length	1.3-1.5 µm

[Ref.: #25266]	Cell width	0.7-1.0 µm

[Ref.: #25266]	Cell shape	rod-shaped

[Ref.: #25266]	Motility	no

[Ref.: #25266]	Colony color	yellow
[Ref.: #25266]	Colony shape	circular
[Ref.: #25266]	Incubation period	2 days
[Ref.: #25266]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25266]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #25266]

Culture medium growth

[Ref.: #25266]

Culture medium

nutritient agar (NA)

[Ref.: #25266]

Culture medium growth

		Temperature
[Ref.: #25266]	growth	20-42 °C
[Ref.: #25266]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #25266]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25266]			optimum	8
[Ref.: #25266]			growth	7.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25266]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25266]		NaCl		growth	0.0-0.5	%(w/v)
[Ref.: #25266]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25266]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #25266]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #25266]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #25266]	4-nitrophenyl beta-D-galactopyranoside ChEBI	-	assimilation
[Ref.: #25266]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #25266]	acetate ChEBI	-	assimilation
[Ref.: #25266]	adipate ChEBI	-	assimilation
[Ref.: #25266]	alanine ChEBI	-	assimilation
[Ref.: #25266]	citrate ChEBI	-	assimilation
[Ref.: #25266]	D-glucose ChEBI	-	assimilation
[Ref.: #25266]	D-mannitol ChEBI	-	assimilation
[Ref.: #25266]	D-mannose ChEBI	-	assimilation
[Ref.: #25266]	D-sorbitol ChEBI	-	assimilation
[Ref.: #25266]	decanoate ChEBI	-	assimilation
[Ref.: #25266]	esculin ChEBI	+	hydrolysis
[Ref.: #25266]	gelatin ChEBI	+	hydrolysis
[Ref.: #25266]	gluconate ChEBI	-	assimilation
[Ref.: #25266]	glucose ChEBI	-	fermentation
[Ref.: #25266]	glycogen ChEBI	-	assimilation
[Ref.: #25266]	itaconate ChEBI	-	assimilation
[Ref.: #25266]	L-arabinose ChEBI	-	assimilation
[Ref.: #25266]	L-fucose ChEBI	-	assimilation
[Ref.: #25266]	L-histidine ChEBI	-	assimilation
[Ref.: #25266]	L-rhamnose ChEBI	-	assimilation
[Ref.: #25266]	L-serine ChEBI	-	assimilation
[Ref.: #25266]	lactate ChEBI	-	assimilation
[Ref.: #25266]	malate ChEBI	-	assimilation
[Ref.: #25266]	malonate ChEBI	-	assimilation
[Ref.: #25266]	maltose ChEBI	-	assimilation
[Ref.: #25266]	melibiose ChEBI	-	assimilation
[Ref.: #25266]	myo-inositol ChEBI	-	assimilation
[Ref.: #25266]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25266]	nitrate ChEBI	-	reduction
[Ref.: #25266]	phenylacetate ChEBI	-	assimilation
[Ref.: #25266]	potassium 2-dehydro-D-gluconate	-	assimilation
[Ref.: #25266]	proline ChEBI	-	assimilation
[Ref.: #25266]	propionate ChEBI	-	assimilation
[Ref.: #25266]	ribose ChEBI	-	assimilation
[Ref.: #25266]	salicin ChEBI	-	assimilation
[Ref.: #25266]	suberic acid ChEBI	-	assimilation
[Ref.: #25266]	sucrose ChEBI	-	assimilation
[Ref.: #25266]	urea ChEBI	-	hydrolysis
[Ref.: #25266]	valerate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25266]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #25266]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25266]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #25266]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25266]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25266]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25266]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25266]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25266]	beta-galactosidase	-	3.2.1.23
[Ref.: #25266]	beta-glucosidase	-	3.2.1.21
[Ref.: #25266]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25266]	catalase	+	1.11.1.6
[Ref.: #25266]	cystine arylamidase	-	3.4.11.3
[Ref.: #25266]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25266]	esterase (C 4)	+
[Ref.: #25266]	esterase Lipase (C 8)	+
[Ref.: #25266]	leucine arylamidase	+	3.4.11.1
[Ref.: #25266]	lipase (C 14)	-
[Ref.: #25266]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25266]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25266]	trypsin	+	3.4.21.4
[Ref.: #25266]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25266]

Fatty acid	Percentage
C16:0 iso	26.9
C17:1 iso ω9c / C16:0 10-methyl	26.2
C15:0 iso	13.7
C16:1ω7c / C16:1ω6c	6.3
C11:0 iso	5.3
C11:0 iso 3OH	4.8
C17:0 iso	3.4
C16:0	2.1
C16:1 iso H	1.3
C10:0 iso	1.1
C14:0 iso	0.8
C15:0 anteiso	0.8
iso-C15:1F	0.7
C12:0 iso	0.7
C14:1ω5c	0.6
C17:0 anteiso	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25266]	Sample type/isolated from	soil sample from arid area
[Ref.: #25266]	Geographic location (country and/or sea, region)	Goyang, Gyeonggi Province
[Ref.: #25266]	Country	Republic of Korea
[Ref.: #25266]	Country ISO 3 Code	KOR
[Ref.: #25266]	Continent	Asia
[Ref.: #25266]	Enrichment culture	R2A agar (MB cell)
[Ref.: #25266]	Enrichment culture duration	3 days
[Ref.: #25266]	Enrichment culture temperature	30 ̊C
[Ref.: #25266]	Isolation/enrichment procedure	standard dilution technique

[Ref.: #67770]	Sample type/isolated from	Soil in an arid area in Goyang
[Ref.: #67770]	Geographic location (country and/or sea, region)	Gyeonggi Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Arid

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25266]	Lysobacter sp. FJY8 16S ribosomal RNA gene, partial sequence	KR698371	1456	GenBank	1720254 tax ID

[Ref.: #25266]	GC-content	68 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	67.6-68.4 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #25266]

Culture collection no.

KCTC 42810, JCM 31019

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter humi sp. nov., isolated from soil.	Lee D, Jang JH, Cha S, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.001722	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25266

D. J. Lee, J. H.,Cha, S.,Seo, T.: Lysobacter humi sp. nov., isolated from soil. IJSEM 67: 951 - 955 2017 ( DOI 10.1099/ijsem.0.001722 , PubMed 27930269 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Lysobacter humi in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF