Arachidicoccus ginsenosidivorans (DSM 22792, JCM 30984, KCTC 22820)

Name: Arachidicoccus ginsenosidivorans (DSM 22792, JCM 30984, KCTC 22820)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133396

Type strain

Culture col. no. DSM 22792 JCM 30984 KCTC 22820 Gsoil 809

NCBI tax ID(s) 496057

Special Collections DSMZ JCM KCTC Literature strains

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Arachidicoccus ginsenosidivorans DSM 22792 is an aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from ginseng cultivating soil.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406212

KCTC 22820,JCM 30984,DSM 22792

@ref 20215

Last LPSN update 2025-12-16 10:01:46

Domain Pseudomonadati

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Arachidicoccus

Species Arachidicoccus ginsenosidivorans

Full scientific name Arachidicoccus ginsenosidivorans Siddiqi et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
25254	negative	1.5-3.0 µm	0.4-1.0 µm	rod-shaped
67771				rod-shaped
67771	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25254	2.0-3.5 mm	yellow	circular	2 days	NA

Pigmentation

@ref	Production	Name
25254		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
25254	Nutrient agar (NA)
25254	Trypticase Soy Agar (TSA)
25254	LB (Luria-Bertani) MEDIUM
25254	MacConkey agar

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
25254	positive	growth	10-37
25254	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
25254	positive	optimum	7
25254	positive	growth	5-7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
25254	aerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25254	NaCl	positive	growth	0-4 %(w/v)
25254	NaCl		optimum	0-1 %(w/v)

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25254	16193 ChEBI	3-hydroxybenzoate	-	assimilation
25254	37054 ChEBI	3-hydroxybutyrate	-	assimilation
25254	17879 ChEBI	4-hydroxybenzoate	-	assimilation
25254	355715 ChEBI	4-nitrophenyl beta-D-galactopyranoside	+	assimilation
25254	17128 ChEBI	adipate	-	assimilation
25254	17634 ChEBI	D-glucose	-	carbon source
25254	16899 ChEBI	D-mannitol	-	assimilation
25254	16024 ChEBI	D-mannose	-	carbon source
25254	16988 ChEBI	D-ribose	-	assimilation
25254	17924 ChEBI	D-sorbitol	-	carbon source
25254	27689 ChEBI	decanoate	-	assimilation
25254	16991 ChEBI	dna	-	hydrolysis
25254	5291 ChEBI	gelatin	-	hydrolysis
25254	28087 ChEBI	glycogen	-	assimilation
25254	28087 ChEBI	glycogen	-	carbon source
25254	27570 ChEBI	histidine	+	carbon source
25254	17240 ChEBI	itaconate	-	assimilation
25254	16977 ChEBI	L-alanine	-	assimilation
25254	30849 ChEBI	L-arabinose	+	assimilation
25254	18287 ChEBI	L-fucose	-	carbon source
25254	17203 ChEBI	L-proline	-	carbon source
25254	62345 ChEBI	L-rhamnose	+	assimilation
25254	17115 ChEBI	L-serine	-	assimilation
25254	16828 ChEBI	L-tryptophan	-	assimilation
25254	24996 ChEBI	lactate	-	assimilation
25254	25115 ChEBI	malate	-	assimilation
25254	17306 ChEBI	maltose	-	assimilation
25254	28053 ChEBI	melibiose	+	assimilation
25254	17268 ChEBI	myo-inositol	-	assimilation
25254	17632 ChEBI	nitrate	+	reduction
25254	18401 ChEBI	phenylacetate	-	assimilation
25254		potassium 2-dehydro-D-gluconate	-	assimilation
25254		potassium 5-dehydro-D-gluconate	-	assimilation
25254	32032 ChEBI	potassium gluconate	-	assimilation
25254	63043 ChEBI	potassium nitrate	+	assimilation
25254	17272 ChEBI	propionate	-	carbon source
25254	17814 ChEBI	salicin	-	carbon source
25254	32954 ChEBI	sodium acetate	-	assimilation
25254	53258 ChEBI	sodium citrate	-	assimilation
25254	62983 ChEBI	sodium malonate	-	assimilation
25254	9300 ChEBI	suberic acid	-	assimilation
25254	17992 ChEBI	sucrose	+	assimilation
25254	16199 ChEBI	urea	-	hydrolysis
25254	31011 ChEBI	valerate	-	assimilation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25254	15688 ChEBI	acetoin
25254	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
25254	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
25254	acid phosphatase	+	3.1.3.2
25254	alkaline phosphatase	+	3.1.3.1
25254	alpha-chymotrypsin	+	3.4.21.1
25254	alpha-fucosidase	+	3.2.1.51
25254	alpha-galactosidase	+	3.2.1.22
25254	alpha-glucosidase	+	3.2.1.20
25254	alpha-mannosidase	-	3.2.1.24
25254	arginine dihydrolase	-	3.5.3.6
25254	beta-galactosidase	+	3.2.1.23
25254	beta-glucuronidase	-	3.2.1.31
25254	catalase	+	1.11.1.6
25254	cystine arylamidase	+	3.4.11.3
25254	cytochrome oxidase	+	1.9.3.1
25254	esterase	+
25254	leucine arylamidase	+	3.4.11.1
25254	lipase (C 14)	-
25254	N-acetyl-beta-glucosaminidase	+	3.2.1.52
25254	naphthol-AS-BI-phosphohydrolase	+
25254	trypsin	-	3.4.21.4
25254	urease	-	3.5.1.5
25254	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

25254

Fatty acid	Percentage
C15:0 iso	42.7
C17:0 iso 3OH	20.7
C15:1 iso G	14.9
C16:1ω7c / C16:1ω6c	9.3
C16:0	3.8
C16:0 3OH	3.8
C15:0 iso 3OH	2.7
C15:0 anteiso	0.9
C16:0 2OH	0.3
C14:0	0.3
C18:0	0.3
C17:0 iso	0.2
C13:0 iso	0.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
25254	ginseng cultivating soil	Pocheon province, Republic of Korea	Republic of Korea	KOR	Asia
64148	soil of a ginseng field	Pocheon province	Republic of Korea	KOR	Asia
67770	Soil of a ginseng field in Pocheon Province		Republic of Korea	KOR	Asia
67771	From ginseng cultivating soil	Daejeon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU370955 (>99% sequence identity) for Arachidicoccus ginsenosidivorans from Microbeatlas

Aquatic Samples	83
Soil Samples	209
Animal Samples	81
Plant Samples	163
Total Samples	536

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64148	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM797138v1 assembly for Arachidicoccus ginsenosidivorans Gsoil 809	complete	GCA_007971385	496057.3	2883724020	496057	87.73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64148	Arachidicoccus ginsenosidivorans strain Gsoil 809 16S ribosomal RNA gene, partial sequence	EU370955	1470		496057

GC content

@ref	GC-content (mol%)	Method
64148	39.4	high performance liquid chromatography (HPLC)
67771	39.4

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Colonization of Listeria monocytogenes in potting soils as affected by bacterial community composition, storage temperature, and natural amendment.	Yoon JH, Kim SA, Shim WB, Seo DC, Choi S, Lee SY, Kim SR.	Food Sci Biotechnol	10.1007/s10068-021-00925-9	2021
Phylogeny	Arachidicoccus terrestris sp. nov., isolated from greenhouse soil.	Won M, Weon HY, Hong SB, Han BH, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.005391	2022
Phylogeny	Arachidicoccus soli sp. nov., a bacterium isolated from soil.	Lee SA, Kim TW, Sang MK, Song J, Kwon SW, Weon HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.004566	2020
Phylogeny	Arachidicoccus ginsenosidivorans sp. nov., with ginsenoside-converting activity isolated from ginseng cultivating soil.	Siddiqi MZ, Aslam Z, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.001720	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25254	M. Z. A. Siddiqi, Z.,Im, W. T.: Arachidicoccus ginsenosidivorans sp. nov., with ginsenoside-converting activity isolated from ginseng cultivating soil. IJSEM 67: 1005 - 1010 2017 ( DOI 10.1099/ijsem.0.001720 , PubMed 27974091 )
#64148	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22792
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arachidicoccus ginsenosidivorans (DSM 22792, JCM 30984, KCTC 22820)

Name and taxonomic classification