Name: Dyella acidisoli 4M-Z03
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133376

Type strain:

Species: Dyella acidisoli

Strain Designation: 4M-Z03

Culture col. no.: NBRC 111980, KCTC 52131

NCBI tax ID(s): 1867834 (species)

Section

Dyella acidisoli 4M-Z03 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from forest soil samples collected from the Dinghushan Biosphere Reserve.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Dyella*
	Species	**Dyella acidisoli**
	Full Scientific Name (LPSN)	Dyella acidisoli Chen et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25243]	Gram stain	negative
[Ref.: #25243]	Gram stain	negative
[Ref.: #25243]	Gram stain	negative

[Ref.: #25243]	Cell length	1.0-4.5 µm
[Ref.: #25243]	Cell length	1.2-2.6 µm
[Ref.: #25243]	Cell length	1.2-2.0 µm

[Ref.: #25243]	Cell width	0.3-0.5 µm
[Ref.: #25243]	Cell width	0.5-0.9 µm
[Ref.: #25243]	Cell width	0.2-0.4 µm

[Ref.: #25243]	Cell shape	rod-shaped
[Ref.: #25243]	Cell shape	rod-shaped
[Ref.: #25243]	Cell shape	rod-shaped

[Ref.: #25243]	Motility	yes
[Ref.: #25243]	Motility	yes
[Ref.: #25243]	Motility	no

[Ref.: #25243]	Flagellum arrangement	polar
[Ref.: #25243]	Flagellum arrangement	polar

[Ref.: #25243]	Colony size	1.0-1.5 mm
[Ref.: #25243]	Colony color	yellow
[Ref.: #25243]	Colony shape	circular
[Ref.: #25243]	Incubation period	2 days
[Ref.: #25243]	Cultivation medium used	R2A

[Ref.: #25243]	Colony size	0.5-1.0 mm
[Ref.: #25243]	Colony color	yellow
[Ref.: #25243]	Colony shape	irregular
[Ref.: #25243]	Incubation period	2 days
[Ref.: #25243]	Cultivation medium used	R2A

[Ref.: #25243]	Colony size	1.0-1.5 mm
[Ref.: #25243]	Colony color	yellow
[Ref.: #25243]	Colony shape	circular
[Ref.: #25243]	Incubation period	3 days
[Ref.: #25243]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

MacConkey

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Culture medium growth

		Temperature
[Ref.: #25243]	growth	10-37 °C
[Ref.: #25243]	growth	10-42 °C
[Ref.: #25243]	optimum	28 °C

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Temperature range

mesophilic

		pH
[Ref.: #25243]	optimum	5.5-6.0
[Ref.: #25243]	optimum	5.0-6.0
[Ref.: #25243]	growth	4.0-7.0
[Ref.: #25243]	growth	4.0-7.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

	Salt		Salt conc.
[Ref.: #25243]	NaCl	growth	0-0.5	%
[Ref.: #25243]	NaCl	growth	0-1.5	%
[Ref.: #25243]	NaCl	growth	0-3.0	%
[Ref.: #25243]	NaCl	optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25243]	adipate ChEBI	-	growth
[Ref.: #25243]	adipate ChEBI	+	growth
[Ref.: #25243]	amygdalin ChEBI	-	growth
[Ref.: #25243]	arbutin ChEBI	-	growth
[Ref.: #25243]	casein	-	hydrolysis
[Ref.: #25243]	cellobiose ChEBI	-	growth
[Ref.: #25243]	cellobiose ChEBI	+	growth
[Ref.: #25243]	D-arabinose ChEBI	-	growth
[Ref.: #25243]	D-arabinose ChEBI	+	growth
[Ref.: #25243]	D-arabitol ChEBI	-	growth
[Ref.: #25243]	D-fructose ChEBI	+	growth
[Ref.: #25243]	D-fucose ChEBI	-	growth
[Ref.: #25243]	D-galactose ChEBI	-	growth
[Ref.: #25243]	D-galactose ChEBI	+	growth
[Ref.: #25243]	D-glucose ChEBI	+	growth
[Ref.: #25243]	D-lyxose ChEBI	-	growth
[Ref.: #25243]	D-lyxose ChEBI	+	growth
[Ref.: #25243]	D-mannitol ChEBI	-	growth
[Ref.: #25243]	D-mannose ChEBI	+	growth
[Ref.: #25243]	D-ribose ChEBI	-	growth
[Ref.: #25243]	D-sorbitol ChEBI	-	growth
[Ref.: #25243]	D-tagatose ChEBI	-	growth
[Ref.: #25243]	D-xylose ChEBI	-	growth
[Ref.: #25243]	D-xylose ChEBI	+	growth
[Ref.: #25243]	decanoate ChEBI	+	growth
[Ref.: #25243]	erythritol ChEBI	-	growth
[Ref.: #25243]	esculin ChEBI	-	hydrolysis
[Ref.: #25243]	esculin ChEBI	+	hydrolysis
[Ref.: #25243]	esculin ChEBI	+	growth
[Ref.: #25243]	galactitol ChEBI	-	growth
[Ref.: #25243]	gelatin ChEBI	-	hydrolysis
[Ref.: #25243]	gentiobiose ChEBI	-	growth
[Ref.: #25243]	gentiobiose ChEBI	+	growth
[Ref.: #25243]	glucose ChEBI	-	fermentation
[Ref.: #25243]	glucose ChEBI	+	fermentation
[Ref.: #25243]	glycerol ChEBI	-	growth
[Ref.: #25243]	glycogen ChEBI	-	growth
[Ref.: #25243]	glycogen ChEBI	+	growth
[Ref.: #25243]	inulin ChEBI	+	growth
[Ref.: #25243]	L-arabinose ChEBI	-	growth
[Ref.: #25243]	L-arabinose ChEBI	+	growth
[Ref.: #25243]	L-arabitol ChEBI	-	growth
[Ref.: #25243]	L-fucose ChEBI	-	growth
[Ref.: #25243]	L-fucose ChEBI	+	growth
[Ref.: #25243]	L-rhamnose ChEBI	-	growth
[Ref.: #25243]	L-sorbose ChEBI	-	growth
[Ref.: #25243]	L-xylose ChEBI	-	growth
[Ref.: #25243]	L-xylose ChEBI	+	growth
[Ref.: #25243]	malate ChEBI	-	growth
[Ref.: #25243]	malate ChEBI	+	growth
[Ref.: #25243]	maltose ChEBI	+	growth
[Ref.: #25243]	melezitose ChEBI	-	growth
[Ref.: #25243]	melibiose ChEBI	-	growth
[Ref.: #25243]	melibiose ChEBI	+	growth
[Ref.: #25243]	methyl alpha-D-glucopyranoside ChEBI	-	growth
[Ref.: #25243]	methyl alpha-D-mannoside ChEBI	-	growth
[Ref.: #25243]	methyl beta-D-xylopyranoside ChEBI	-	growth
[Ref.: #25243]	myo-inositol ChEBI	-	growth
[Ref.: #25243]	myo-inositol ChEBI	+	growth
[Ref.: #25243]	N-acetylglucosamine ChEBI	+	growth
[Ref.: #25243]	nitrate ChEBI	-	reduction
[Ref.: #25243]	nitrate ChEBI	+	reduction
[Ref.: #25243]	phenylacetate ChEBI	-	growth
[Ref.: #25243]	potassium 2-dehydro-D-gluconate	-	growth
[Ref.: #25243]	potassium 5-dehydro-D-gluconate	-	growth
[Ref.: #25243]	raffinose ChEBI	-	growth
[Ref.: #25243]	raffinose ChEBI	+	growth
[Ref.: #25243]	ribitol ChEBI	-	growth
[Ref.: #25243]	salicin ChEBI	-	growth
[Ref.: #25243]	sodium citrate ChEBI	-	growth
[Ref.: #25243]	starch ChEBI	-	hydrolysis
[Ref.: #25243]	sucrose ChEBI	-	growth
[Ref.: #25243]	sucrose ChEBI	+	growth
[Ref.: #25243]	trehalose ChEBI	-	growth
[Ref.: #25243]	trehalose ChEBI	+	growth
[Ref.: #25243]	turanose ChEBI	-	growth
[Ref.: #25243]	tween 80 ChEBI	-	hydrolysis
[Ref.: #25243]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25243]	xylitol ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25243]		hydrogen sulfide ChEBI	no
[Ref.: #25243]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #25243]	acid phosphatase	+	3.1.3.2
[Ref.: #25243]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25243]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25243]	alpha-fucosidase	+	3.2.1.51
[Ref.: #25243]	alpha-galactosidase	+	3.2.1.22
[Ref.: #25243]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25243]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25243]	alpha-mannosidase	+	3.2.1.24
[Ref.: #25243]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25243]	arginine dihydrolase	+	3.5.3.6
[Ref.: #25243]	beta-galactosidase	+	3.2.1.23
[Ref.: #25243]	beta-glucosidase	-	3.2.1.21
[Ref.: #25243]	beta-glucosidase	+	3.2.1.21
[Ref.: #25243]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25243]	catalase	-	1.11.1.6
[Ref.: #25243]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25243]	esterase (C 4)	+
[Ref.: #25243]	esterase Lipase (C 8)	+
[Ref.: #25243]	leucine arylamidase	+	3.4.11.1
[Ref.: #25243]	lipase (C 14)	-
[Ref.: #25243]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #25243]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25243]	trypsin	-	3.4.21.4
[Ref.: #25243]	urease	-	3.5.1.5
[Ref.: #25243]	urease	+	3.5.1.5
[Ref.: #25243]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25243]

Fatty acid	Percentage
C16:0 iso	23.7
C15:0 iso	14.7
C17:1 iso ω9c	13.5
C17:0 iso	10
C16:0	6.1
C11:0 iso	4.5
C15:0 iso 2OH / C16:1ω7c	4.4
C11:0 iso 3OH	4
C15:0 anteiso	3.5
C13:0 iso 3OH	3
C14:0 iso	1.6
C17:0 anteiso	1.5
C15:1ω5c	1.4
C18:0 iso	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25243]	Sample type/isolated from	forest soil samples collected from the Dinghushan Biosphere Reserve
[Ref.: #25243]	Geographic location (country and/or sea, region)	Dinghushan Biosphere Reserve, Guangdong Province, PR China
[Ref.: #25243]	Country	China
[Ref.: #25243]	Country ISO 3 Code	CHN
[Ref.: #25243]	Continent	Asia
[Ref.: #25243]	Geographic location	23.0000°/112.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25243]	16S rRNA gene sequences	KX430826	1442	ENA	1867834 tax ID
[Ref.: #25243]	16S rRNA gene sequences	KX430825	1468	ENA	1867833 tax ID
[Ref.: #25243]	16S rRNA gene sequences	KU296959	1502	ENA	1849580 tax ID

[Ref.: #25243]	GC-content	58.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #25243]	GC-content	59 mol%	high performance liquid chromatography (HPLC)
[Ref.: #25243]	GC-content	58.8 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25243]

Culture collection no.

NBRC 111980, KCTC 52131

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dyella monticola sp. nov. and Dyella psychrodurans sp. nov., isolated from monsoon evergreen broad-leaved forest soil of Dinghu Mountain, China.	Zhou XY, Gao ZH, Chen MH, Jian MQ, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003259	2019	*
Phylogeny	Dyella acidisoli sp. nov., D. flagellata sp. nov. and D. nitratireducens sp. nov., isolated from forest soil.	Chen MH, Xia F, Lv YY, Zhou XY, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001716	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25243

M.-h. X. Chen, Fan,Lv, Ying-ying,Zhou, Xiang-yue,Qiu, Li-hong: Dyella acidisoli sp. nov., D. flagellata sp. nov. and D. nitratireducens sp. nov., isolated from forest soil. IJSEM 67: 736 - 743 2017 ( DOI 10.1099/ijsem.0.001716 , PubMed 27930272 )

* These data were automatically processed and therefore are not curated

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