Name: Hymenobacter seoulensis 16F7G
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133364

Type strain:

Species: Hymenobacter seoulensis

Strain Designation: 16F7G

Culture col. no.: KCTC 52197, JCM 31655

Strain history: <- Hee-Young Jung, Kyungpook National Univ.

NCBI tax ID(s): 1867106 (species)

Special Collections

Section

Hymenobacter seoulensis 16F7G is an aerobe, Gram-negative, rod-shaped bacterium that has a pink pigmentation and was isolated from a water sample collected from the Han River in Seoul.

Gram-negative
pigmented
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter seoulensis**
	Full Scientific Name (LPSN)	Hymenobacter seoulensis Lee et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25224]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #25224]	Cell length	2.6 µm

[Ref.: #25224]	Cell width	1 µm

[Ref.: #25224]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #25224]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #25224]	Colony color	pink
[Ref.: #25224]	Incubation period	3 days

[Ref.: #25224]	Pigment production	yes
[Ref.: #25224]	Pigmentation color	pink

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25224]

Culture medium

NA (nutrient agar)

[Ref.: #25224]

Culture medium growth

[Ref.: #25224]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #25224]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #25224]		growth	15-37 °C
[Ref.: #25224]		optimum	25 °C
[Ref.: #25224]	no	growth	4 °C
[Ref.: #25224]	no	growth	10 °C
[Ref.: #25224]	inconsistent	growth	30 °C
[Ref.: #25224]	inconsistent	growth	37 °C
[Ref.: #25224]	no	growth	42 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #67771]		growth	25 °C

	Kind of pH		pH
[Ref.: #25224]		optimum	7
[Ref.: #25224]		growth	4-7
[Ref.: #25224]		growth	4
[Ref.: #25224]		growth	5
[Ref.: #25224]	no	growth	8
[Ref.: #25224]	no	growth	9
[Ref.: #25224]	no	growth	10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25224]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #25224]	NaCl		optimum	0	%
[Ref.: #25224]	NaCl		growth	0.5	%(w/v)
[Ref.: #25224]	NaCl	no	growth	1	%(w/v)
[Ref.: #25224]	NaCl	no	growth	2	%(w/v)
[Ref.: #25224]	NaCl	no	growth	3	%(w/v)
[Ref.: #25224]	NaCl	no	growth	4	%(w/v)
[Ref.: #25224]	NaCl	no	growth	5	%(w/v)
[Ref.: #25224]	NaCl	no	growth	10	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25224]	2-oxogluconate	-	assimilation
[Ref.: #25224]	2-oxogluconate	-	fermentation
[Ref.: #25224]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #25224]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #25224]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #25224]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #25224]	5-dehydro-D-gluconate ChEBI	-	fermentation
[Ref.: #25224]	acetate ChEBI	-	assimilation
[Ref.: #25224]	adipate ChEBI	+	assimilation
[Ref.: #25224]	amygdalin ChEBI	-	fermentation
[Ref.: #25224]	arbutin ChEBI	+	fermentation
[Ref.: #25224]	butyrate ChEBI	-	assimilation
[Ref.: #25224]	cellobiose ChEBI	+	fermentation
[Ref.: #25224]	citrate ChEBI	-	assimilation
[Ref.: #25224]	D-arabinose ChEBI	-	fermentation
[Ref.: #25224]	D-arabitol ChEBI	-	fermentation
[Ref.: #25224]	D-fructose ChEBI	+	fermentation
[Ref.: #25224]	D-fucose ChEBI	-	fermentation
[Ref.: #25224]	D-galactose ChEBI	+	fermentation
[Ref.: #25224]	D-glucose ChEBI	+	assimilation
[Ref.: #25224]	D-lyxose ChEBI	-	fermentation
[Ref.: #25224]	D-mannitol ChEBI	-	assimilation
[Ref.: #25224]	D-mannose ChEBI	+	assimilation
[Ref.: #25224]	D-mannose ChEBI	+	fermentation
[Ref.: #25224]	D-ribose ChEBI	-	assimilation
[Ref.: #25224]	D-sorbitol ChEBI	-	assimilation
[Ref.: #25224]	D-tagatose ChEBI	-	fermentation
[Ref.: #25224]	D-xylose ChEBI	-	fermentation
[Ref.: #25224]	erythritol ChEBI	-	fermentation
[Ref.: #25224]	esculin ChEBI	+	fermentation
[Ref.: #25224]	galactitol ChEBI	-	fermentation
[Ref.: #25224]	gelatin ChEBI	+	hydrolysis
[Ref.: #25224]	gentiobiose ChEBI	+	fermentation
[Ref.: #25224]	gluconate ChEBI	-	fermentation
[Ref.: #25224]	gluconate ChEBI	+	assimilation
[Ref.: #25224]	glucose ChEBI	+	builds acid from
[Ref.: #25224]	glycerol ChEBI	-	fermentation
[Ref.: #25224]	glycogen ChEBI	+	assimilation
[Ref.: #25224]	glycogen ChEBI	+	fermentation
[Ref.: #25224]	inulin ChEBI	+	fermentation
[Ref.: #25224]	itaconate ChEBI	-	assimilation
[Ref.: #25224]	L-alanine ChEBI	-	assimilation
[Ref.: #25224]	L-arabinose ChEBI	+	assimilation
[Ref.: #25224]	L-arabinose ChEBI	+	fermentation
[Ref.: #25224]	L-arabitol ChEBI	-	fermentation
[Ref.: #25224]	L-fucose ChEBI	-	assimilation
[Ref.: #25224]	L-fucose ChEBI	-	fermentation
[Ref.: #25224]	L-histidine ChEBI	-	assimilation
[Ref.: #25224]	L-malate ChEBI	-	assimilation
[Ref.: #25224]	L-proline ChEBI	+	assimilation
[Ref.: #25224]	L-rhamnose ChEBI	-	fermentation
[Ref.: #25224]	L-rhamnose ChEBI	+	assimilation
[Ref.: #25224]	L-serine ChEBI	-	assimilation
[Ref.: #25224]	L-sorbose ChEBI	-	fermentation
[Ref.: #25224]	L-xylose ChEBI	-	fermentation
[Ref.: #25224]	lactate ChEBI	-	assimilation
[Ref.: #25224]	lactose ChEBI	+	fermentation
[Ref.: #25224]	malonate ChEBI	-	assimilation
[Ref.: #25224]	maltose ChEBI	+	assimilation
[Ref.: #25224]	maltose ChEBI	+	fermentation
[Ref.: #25224]	mannitol ChEBI	-	fermentation
[Ref.: #25224]	melezitose ChEBI	-	fermentation
[Ref.: #25224]	melibiose ChEBI	-	fermentation
[Ref.: #25224]	melibiose ChEBI	+	assimilation
[Ref.: #25224]	methyl alpha-D-mannoside ChEBI	-	fermentation
[Ref.: #25224]	methyl beta-D-xylopyranoside ChEBI	-	fermentation
[Ref.: #25224]	methyl D-glucoside ChEBI	-	fermentation
[Ref.: #25224]	myo-inositol ChEBI	-	fermentation
[Ref.: #25224]	myo-inositol ChEBI	+	assimilation
[Ref.: #25224]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25224]	N-acetylglucosamine ChEBI	-	fermentation
[Ref.: #25224]	nitrate ChEBI	-	reduction
[Ref.: #25224]	phenylacetate ChEBI	-	assimilation
[Ref.: #25224]	propionate ChEBI	-	assimilation
[Ref.: #25224]	raffinose ChEBI	+	fermentation
[Ref.: #25224]	ribitol ChEBI	-	fermentation
[Ref.: #25224]	ribose ChEBI	-	fermentation
[Ref.: #25224]	salicin ChEBI	-	fermentation
[Ref.: #25224]	salicin ChEBI	+	assimilation
[Ref.: #25224]	sorbitol ChEBI	-	fermentation
[Ref.: #25224]	starch ChEBI	+	fermentation
[Ref.: #25224]	suberic acid ChEBI	-	assimilation
[Ref.: #25224]	sucrose ChEBI	+	assimilation
[Ref.: #25224]	sucrose ChEBI	+	fermentation
[Ref.: #25224]	trehalose ChEBI	+	fermentation
[Ref.: #25224]	turanose ChEBI	-	fermentation
[Ref.: #25224]	xylitol ChEBI	-	fermentation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25224]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #25224]	acid phosphatase	+	3.1.3.2
[Ref.: #25224]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25224]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25224]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25224]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25224]	alpha-glucosidase	+/-	3.2.1.20
[Ref.: #25224]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25224]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25224]	beta-galactosidase	-	3.2.1.23
[Ref.: #25224]	beta-glucosidase	+/-	3.2.1.21
[Ref.: #25224]	beta-glucosidase	-	3.2.1.21
[Ref.: #25224]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25224]	catalase	+	1.11.1.6
[Ref.: #25224]	cystine arylamidase	-	3.4.11.3
[Ref.: #25224]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25224]	esterase (C 4)	-
[Ref.: #25224]	esterase Lipase (C 8)	+/-
[Ref.: #25224]	leucine arylamidase	+	3.4.11.1
[Ref.: #25224]	lipase (C 14)	-
[Ref.: #25224]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25224]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25224]	trypsin	-	3.4.21.4
[Ref.: #25224]	urease	-	3.5.1.5
[Ref.: #25224]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25224]

Fatty acid	Percentage
C17:1 iso I /C17:1 anteiso B	19.8
C16:1ω7c / C16:1ω6c	18.4
C15:0 iso	17
C16:1ω5c	11.8
C15:0 anteiso	9.8
C17:0 iso 3OH	5.2
C17:0 iso	2.8
C15:0 iso 3OH	2.8
C16:0	2.6
C16:1 iso H	1.9
C16:0 iso	1.1
C17:0 anteiso	1
iso-C15:0 H / C13:0 3-OH	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25224]	Sample type/isolated from	a water sample collected from the Han River in Seoul
[Ref.: #25224]	Geographic location (country and/or sea, region)	Han River in Seoul, Republic of Korea
[Ref.: #25224]	Country	Republic of Korea
[Ref.: #25224]	Country ISO 3 Code	KOR
[Ref.: #25224]	Continent	Asia
[Ref.: #25224]	Geographic location	37.0000°/126.9350°

[Ref.: #67770]	Sample type/isolated from	Water of the Han River in Seoul
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Han River, Seoul
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	37.5278°/126.9350°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU758880 (>99% sequence identity) for Hymenobacter from Microbeatlas

Aquatic Samples	215
Soil Samples	219
Animal Samples	710
Plant Samples	14
Total Samples	1158

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25224]	Hymenobacter seoulensis strain 16F7G 16S ribosomal RNA gene, partial sequence	KU758880	1468	GenBank ENA	1867106 tax ID

[Ref.: #25224]	GC-content	56.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	56.6 mol%

Availability in culture collections External links

[Ref.: #25224]

Culture collection no.

KCTC 52197, JCM 31655

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter seoulensis sp. nov., isolated from river water.	Lee JJ, Lee YH, Park SJ, Lee SY, Park S, Kim MK, Ten LN, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001668	2017	*
Phylogeny	Hymenobacter aquatilis sp. nov., isolated from a mesotrophic artificial lake.	Kang H, Cha I, Kim H, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002792	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25224

J. J. L. Lee, Y. H.,Park, S. J.,Lee, S. Y.,Park, S.,Kim, M. K.,Ten, L. N.,Jung, H. Y.: Hymenobacter seoulensis sp. nov., isolated from river water. IJSEM 67: 596 - 601 2017 ( DOI 10.1099/ijsem.0.001668 , PubMed 27902264 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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