Name: Chryseobacterium endophyticum CC-YTH209
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133361

Type strain:

Species: Chryseobacterium endophyticum

Strain Designation: CC-YTH209

Culture col. no.: BCRC 80938, JCM 31226

Strain history: C.-C. Young; Coll. of Agric. & Nat. Resour., Natl. Chung Hsing Univ., Taiwan; CC-YTH209.

NCBI tax ID(s): 1854762 (species)

Section

Chryseobacterium endophyticum CC-YTH209 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from a maize leaf in Taiwan.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium endophyticum**
	Full Scientific Name (LPSN)	Chryseobacterium endophyticum Lin et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25244]	Gram stain	negative

[Ref.: #25244]	Cell length	1.6-2.0 µm

[Ref.: #25244]	Cell width	0.6-0.8 µm

[Ref.: #25244]	Cell shape	rod-shaped

[Ref.: #25244]	Motility	no

[Ref.: #25244]	Colony size	2-3 mm
[Ref.: #25244]	Colony color	yellowish
[Ref.: #25244]	Colony shape	circular
[Ref.: #25244]	Incubation period	2 days
[Ref.: #25244]	Cultivation medium used	NA

[Ref.: #25244]	Pigment production	yes
[Ref.: #25244]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25244]

Culture medium

Nutrient agar (NA)

[Ref.: #25244]

Culture medium growth

		Temperature
[Ref.: #25244]	growth	15-40 °C
[Ref.: #25244]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #25244]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25244]			optimum	7
[Ref.: #25244]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25244]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25244]		NaCl		optimum	1	%
[Ref.: #25244]		NaCl		growth	0-2	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25244]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #25244]	acetate ChEBI	+	carbon source
[Ref.: #25244]	adipate ChEBI	-	assimilation
[Ref.: #25244]	alpha-cyclodextrin ChEBI	+	oxidation
[Ref.: #25244]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #25244]	cellobiose ChEBI	+	carbon source
[Ref.: #25244]	D-fructose ChEBI	+	carbon source
[Ref.: #25244]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #25244]	D-glucose ChEBI	+	assimilation
[Ref.: #25244]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #25244]	D-mannose ChEBI	+	carbon source
[Ref.: #25244]	D-psicose ChEBI	+	carbon source
[Ref.: #25244]	dextrin ChEBI	+	carbon source
[Ref.: #25244]	gelatin ChEBI	+	hydrolysis
[Ref.: #25244]	gentiobiose ChEBI	+	carbon source
[Ref.: #25244]	glucose 1-phosphate ChEBI	+	carbon source
[Ref.: #25244]	glycogen ChEBI	+	carbon source
[Ref.: #25244]	glycyl-l-glutamate ChEBI	+	carbon source
[Ref.: #25244]	L-arabinose ChEBI	+	assimilation
[Ref.: #25244]	L-asparagine ChEBI	+	carbon source
[Ref.: #25244]	L-aspartate ChEBI	+	carbon source
[Ref.: #25244]	L-glutamate ChEBI	+	carbon source
[Ref.: #25244]	malate ChEBI	-	assimilation
[Ref.: #25244]	maltose ChEBI	+	carbon source
[Ref.: #25244]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #25244]	nitrate ChEBI	-	reduction
[Ref.: #25244]	nitrite ChEBI	-	reduction
[Ref.: #25244]	propionate ChEBI	+	carbon source
[Ref.: #25244]	sucrose ChEBI	+	carbon source
[Ref.: #25244]	tween 20 ChEBI	-	hydrolysis
[Ref.: #25244]	tween 40 ChEBI	-	hydrolysis
[Ref.: #25244]	tween 60 ChEBI	-	hydrolysis
[Ref.: #25244]	tween 80 ChEBI	-	hydrolysis
[Ref.: #25244]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25244]		hydrogen sulfide ChEBI	no
[Ref.: #25244]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #25244]	acid phosphatase	+	3.1.3.2
[Ref.: #25244]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25244]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #25244]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25244]	beta-glucosidase	+	3.2.1.21
[Ref.: #25244]	beta-glucuronidase	+	3.2.1.31
[Ref.: #25244]	catalase	+	1.11.1.6
[Ref.: #25244]	cystine arylamidase	+	3.4.11.3
[Ref.: #25244]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25244]	DNase	+
[Ref.: #25244]	esterase (C 4)	+
[Ref.: #25244]	esterase Lipase (C 8)	+
[Ref.: #25244]	leucine arylamidase	+	3.4.11.1
[Ref.: #25244]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #25244]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25244]	trypsin	+	3.4.21.4
[Ref.: #25244]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25244]

Fatty acid	Percentage
C17:0 iso 3OH	28
C15:0 iso	23.5
C16:1ω6c / C16:1ω7c	19.8
C15:0 iso 3OH	6.5
C15:1ω5c	5.9
10-Methyl C16:0 / iso-C17:1ω9c	3.4
C16:0 iso 3OH	1.7
C16:0 3OH	1.5
C14:0 iso	1.3
C15:0 anteiso	1.3
C16:0	1.2
C17:0 2OH	1.2
C18:1ω9c	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25244]	Sample type/isolated from	a maize leaf in Taiwan
[Ref.: #25244]	Geographic location (country and/or sea, region)	Wufeng District, Taichung City, Taiwan
[Ref.: #25244]	Country	Taiwan
[Ref.: #25244]	Country ISO 3 Code	TWN
[Ref.: #25244]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Maize leaf
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU358716 (>99% sequence identity) for Chryseobacterium endophyticum subclade from Microbeatlas

Aquatic Samples	25
Soil Samples	23
Animal Samples	101
Plant Samples	30
Total Samples	179

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25244]	16S rRNA gene sequences	KU358716	1458	ENA	1854762 tax ID

[Ref.: #25244]

GC-content

37.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25244]

Culture collection no.

BCRC 80938, JCM 31226

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium endophyticum sp. nov., isolated from a maize leaf.	Lin SY, Hameed A, Liu YC, Hsu YH, Hsieh YT, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001656	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25244

S.-Y. H. Lin, Asif,Liu, You-Cheng,Hsu, Yi-Han,Hsieh, Yu-Ting,Lai, Wei-An,Young, Chiu-Chung: Chryseobacterium endophyticum sp. nov., isolated from a maize leaf. IJSEM 67: 570 - 575 2017 ( DOI 10.1099/ijsem.0.001656 , PubMed 27902278 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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