Croceibacterium soli (MN-1, KCTC 52135, MCCC 1K02066)

Name: Croceibacterium soli (MN-1, KCTC 52135, MCCC 1K02066)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133352

Type strain

Strain Designation MN-1

Culture col. no. MN-1 KCTC 52135 MCCC 1K02066

NCBI tax ID(s) 1739690

Special Collections KCTC Literature strains

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Croceibacterium soli MN-1 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from desert sand sample.

Gram-negative motile rod-shaped colony-forming obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28200

KCTC 52135

@ref 20215

Last LPSN update 2026-05-29 08:38:04

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Erythrobacteraceae

Genus Croceibacterium

Species Croceibacterium soli

Full scientific name Croceibacterium soli (Zhao et al. 2017) Xu et al. 2020

Synonyms (1)

Altererythrobacter soli

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement	Confidence
25170	negative	0.9-1.5 µm	0.3-0.5 µm	rod-shaped		polar
125439	negative						93.193

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25170	1 mm	ivory	circular	3 days	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
25170	Reasoner's 2A agar (R2A)
25170	tryptic soy agar (TSA)
25170	marine agar (MA)
25170	MacConkey agar

Culture temp

@ref	Growth	Type	Temperature (°C)
25170	positive	growth	4.0-37.0
25170	positive	optimum	28.0-32.0

Culture pH

@ref	Ability	Type	PH	PH range
25170	positive	optimum	7.0-9.0
25170	positive	growth	6.5-12.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25170	obligate aerobe
125439	obligate aerobe	99.141

Spore formation

@ref	Spore formation	Confidence
125439		98.348

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25170	NaCl		optimum	2 %
25170	NaCl	positive	growth	0.0-2.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25170	58143 ChEBI	5-dehydro-D-gluconate	+	builds acid from
25170	30089 ChEBI	acetate	+	carbon source
25170	13705 ChEBI	acetoacetate	+	carbon source
25170	62968 ChEBI	cellulose	-	hydrolysis
25170	15824 ChEBI	D-fructose	+	carbon source
25170	78697 ChEBI	D-fructose 6-phosphate	+	carbon source
25170	12936 ChEBI	D-galactose	-	builds acid from
25170	18024 ChEBI	D-galacturonic acid	+	carbon source
25170	15748 ChEBI	D-glucuronate	+	carbon source
25170	16991 ChEBI	dna	-	hydrolysis
25170	4853 ChEBI	esculin	+	hydrolysis
25170	5291 ChEBI	gelatin	-	hydrolysis
25170	32323 ChEBI	glucuronamide	+	carbon source
25170	70744 ChEBI	glycine-proline	+	carbon source
25170	16977 ChEBI	L-alanine	+	carbon source
25170	30849 ChEBI	L-arabinose	-	builds acid from
25170	51850 ChEBI	methyl pyruvate	+	carbon source
25170	17632 ChEBI	nitrate	+	reduction
25170	17309 ChEBI	pectin	+	carbon source
25170	17814 ChEBI	salicin	+	builds acid from
25170	17814 ChEBI	salicin	+	carbon source
25170	28017 ChEBI	starch	-	hydrolysis
25170	27897 ChEBI	tryptophan	-	energy source
25170	53426 ChEBI	tween 80	+	hydrolysis
25170	16199 ChEBI	urea	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
25170	28971	ampicillin	10 µg (disc)
25170	48923	erythromycin		15 µg (disc)
25170	17334	penicillin	10 Unit

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25170	16136 ChEBI	hydrogen sulfide
25170	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
25170	35581 ChEBI	indole	-

Enzymes

@ref	Value	Activity	Ec
25170	acid phosphatase	-	3.1.3.2
25170	alkaline phosphatase	+	3.1.3.1
25170	alpha-chymotrypsin	+	3.4.21.1
25170	alpha-fucosidase	-	3.2.1.51
25170	alpha-galactosidase	-	3.2.1.22
25170	alpha-glucosidase	-	3.2.1.20
25170	alpha-mannosidase	-	3.2.1.24
25170	beta-galactosidase	-	3.2.1.23
25170	beta-glucosidase	+	3.2.1.21
25170	beta-glucuronidase	-	3.2.1.31
25170	catalase	+	1.11.1.6
25170	cystine arylamidase	-	3.4.11.3
25170	cytochrome oxidase	+	1.9.3.1
25170	esterase (C 4)	+
25170	esterase Lipase (C 8)	+
25170	leucine arylamidase	+	3.4.11.1
25170	lipase (C 14)	-
25170	N-acetyl-beta-glucosaminidase	-	3.2.1.52
25170	naphthol-AS-BI-phosphohydrolase	-
25170	trypsin	+	3.4.21.4
25170	tryptophan deaminase	-	4.1.99.1
25170	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

25170

Fatty acid	Percentage
C18:1ω7c	35.9
C16:1ω7c / C16:1ω6c	28.3
C16:0	9.1
C14:0 2OH	7.7
11-Methyl C18:1ω7c	6.5
C17:1ω6c	4.2
C16:1ω5c	1.8
C15:0 2OH	1.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Sandy

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
25170	desert sand sample	Tengger desert	China	CHN	Asia	38	102 38/102	R2A agar (Oxoid)	7 days	25	serially diluted with sterile water

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM982806v1 assembly for Croceibacterium soli MCCC 1K02066	contig	GCA_009828065	1739690.3	2915103981	1739690	70.77

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25170	Croceibacterium soli strain MN-1 16S ribosomal RNA gene, partial sequence	KT906300	1449		1739690

GC content

@ref	GC-content (mol%)	Method
25170	67	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM982806v1 assembly for Croceibacterium soli MCCC 1K02066
NCBI: GCA_009828065

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.14	no
125439	gram_stain	BacteriaNetⓘ	negative	93.19	no
125439	spore_formation	BacteriaNetⓘ	no	98.35	no
125439	motility	BacteriaNetⓘ	yes	49.91	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25170	Q. L. Zhao, H. R.,Han, Q. Q.,He, A. L.,Nie, C. Y.,Wang, S. M.,Zhang, J. L.: Altererythrobacter soli sp. nov., isolated from desert sand. IJSEM 67: 454 - 459 2017 ( DOI 10.1099/ijsem.0.001652 , PubMed 27902308 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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