Alteromonas lipolytica (JW12, CGMCC 1.15735, KCTC 52408)

Name: Alteromonas lipolytica (JW12, CGMCC 1.15735, KCTC 52408)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133345

Type strain

Strain Designation JW12

Culture col. no. JW12 CGMCC 1.15735 KCTC 52408 MCCC 1K03175

NCBI tax ID(s) 1856405

Special Collections KCTC Literature strains

Links

Alteromonas lipolytica JW12 is an aerobe, chemoorganotroph, Gram-negative prokaryote that forms circular colonies and was isolated from surface seawater.

Gram-negative motile rod-shaped colony-forming aerobe chemoorganotroph genome sequence 16S sequence

Name and taxonomic classification

SI-ID 25569

KCTC 52408

@ref 20215

Last LPSN update 2025-12-16 10:01:45

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Alteromonas

Species Alteromonas lipolytica

Full scientific name Alteromonas lipolytica Shi et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
25171	negative	1.5-2.2 µm	0.7-1.2 µm	rod-shaped
125439	negative				95
125438	negative				97.5

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25171	1.0-2.0 mm	cream	circular	1 day	marine agar (MA)

Culture and growth conditions

Culture medium

@ref	Name	Growth
25171	marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
25171	positive	growth	15.0-43.0
25171	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
25171	positive	optimum	7
25171	positive	growth	5.5-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25171	aerobe
125439	aerobe	94.2

Nutrition type

25171

Typechemoorganotroph

Spore formation

@ref	Spore formation	Confidence
125439		93.2
125438		91.296

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25171	NaCl	positive	growth	0.5-10.0 %(w/v)
25171	NaCl		optimum	3 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25171	36219 ChEBI	alpha-lactose	+	builds acid from
25171	17057 ChEBI	cellobiose	+	builds acid from
25171	12936 ChEBI	D-galactose	+	builds acid from
25171	17634 ChEBI	D-glucose	+	builds acid from
25171	16899 ChEBI	D-mannitol	-	builds acid from
25171	16024 ChEBI	D-mannose	-	builds acid from
25171	17924 ChEBI	D-sorbitol	-	builds acid from
25171	65327 ChEBI	D-xylose	-	builds acid from
25171	4853 ChEBI	esculin	+	hydrolysis
25171	16236 ChEBI	ethanol	-	builds acid from
25171	5291 ChEBI	gelatin	-	hydrolysis
25171	62345 ChEBI	L-rhamnose	-	builds acid from
25171	17266 ChEBI	L-sorbose	-	builds acid from
25171	17306 ChEBI	maltose	+	builds acid from
25171	6731 ChEBI	melezitose	+	builds acid from
25171	17268 ChEBI	myo-inositol	-	builds acid from
25171	16634 ChEBI	raffinose	+	builds acid from
25171	15963 ChEBI	ribitol	-	builds acid from
25171	33942 ChEBI	ribose	+	builds acid from
25171	28017 ChEBI	starch	-	hydrolysis
25171	17992 ChEBI	sucrose	+	builds acid from
25171	27082 ChEBI	trehalose	+	builds acid from
25171	53424 ChEBI	tween 20	+	hydrolysis
25171	53423 ChEBI	tween 40	+	hydrolysis
25171	53426 ChEBI	tween 80	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25171	53388 ChEBI	polyhydroxybutyrate

Enzymes

@ref	Value	Activity	Ec
25171	acid phosphatase	+	3.1.3.2
25171	alkaline phosphatase	+	3.1.3.1
25171	alpha-chymotrypsin	+	3.4.21.1
25171	alpha-galactosidase	+	3.2.1.22
25171	alpha-glucosidase	+	3.2.1.20
25171	alpha-mannosidase	-	3.2.1.24
25171	beta-glucosidase	+	3.2.1.21
25171	beta-glucuronidase	+	3.2.1.31
25171	catalase	-	1.11.1.6
25171	cystine arylamidase	+	3.4.11.3
25171	cytochrome oxidase	+	1.9.3.1
25171	esterase (C 4)	+
25171	esterase Lipase (C 8)	+
25171	leucine arylamidase	+	3.4.11.1
25171	lipase (C 14)	-
25171	naphthol-AS-BI-phosphohydrolase	+
25171	trypsin	+	3.4.21.4
25171	urease	-	3.5.1.5
25171	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	valine metabolism	100	9 of 9
66794	pentose phosphate pathway	100	11 of 11
66794	glycogen metabolism	100	5 of 5
66794	starch degradation	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	adipate degradation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	propanol degradation	100	7 of 7
66794	L-lactaldehyde degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	ribulose monophosphate pathway	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	suberin monomers biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	gluconeogenesis	100	8 of 8
66794	folate polyglutamylation	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	cellulose degradation	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	cyanate degradation	100	3 of 3
66794	taurine degradation	100	1 of 1
66794	photosynthesis	92.86	13 of 14
66794	citric acid cycle	92.86	13 of 14
66794	phenol degradation	90	18 of 20
66794	alanine metabolism	89.66	26 of 29
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	serine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	3-phenylpropionate degradation	86.67	13 of 15
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glutathione metabolism	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	pyrimidine metabolism	84.44	38 of 45
66794	purine metabolism	84.04	79 of 94
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	gallate degradation	80	4 of 5
66794	tryptophan metabolism	78.95	30 of 38
66794	heme metabolism	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	allantoin degradation	77.78	7 of 9
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	lipid metabolism	74.19	23 of 31
66794	flavin biosynthesis	73.33	11 of 15
66794	methionine metabolism	73.08	19 of 26
66794	proline metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	arginine metabolism	70.83	17 of 24
66794	propionate fermentation	70	7 of 10
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	lysine metabolism	66.67	28 of 42
66794	methane metabolism	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	enterobactin biosynthesis	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	degradation of sugar acids	64	16 of 25
66794	vitamin B6 metabolism	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	histidine metabolism	58.62	17 of 29
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	degradation of sugar alcohols	56.25	9 of 16
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	d-xylose degradation	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	glycine metabolism	50	5 of 10
66794	kanosamine biosynthesis II	50	1 of 2
66794	degradation of hexoses	50	9 of 18
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	toluene degradation	50	2 of 4
66794	oxidative phosphorylation	47.25	43 of 91
66794	sulfate reduction	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	polyamine pathway	43.48	10 of 23
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	methanogenesis from CO2	41.67	5 of 12
66794	bile acid biosynthesis, neutral pathway	41.18	7 of 17
66794	D-cycloserine biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	degradation of pentoses	39.29	11 of 28
66794	arachidonic acid metabolism	38.89	7 of 18
66794	vitamin B1 metabolism	38.46	5 of 13
66794	carotenoid biosynthesis	36.36	8 of 22
66794	ascorbate metabolism	36.36	8 of 22
66794	nitrate assimilation	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	cyclohexanol degradation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	lactate fermentation	25	1 of 4

Fatty acid profile

Metadata FA analysis

@ref

25171

Fatty acid	Percentage
C16:1ω7c / C15:0 iso 2OH	34
C16:0	26.7
C18:1ω7c	14.6
C12:0	3.6
C14:0 3OH / C16:1 iso I	3.3
C14:0	3
C12:1 3OH	2.8
C12:0 3OH	2.6
C16:1ω7c alcohol	1.5
C18:0	1.2
C17:1ω8c	1
C16:0 n alcohol	1
C15:0	0.6
C17:0	0.5
C16:0 3OH	0.5
10-Methyl C17:0	0.5
C13:1 at 12-13	0.4
C10:0 3OH	0.4
C15:1ω8c	0.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

Isolation

@ref	Sample type	Geographic location	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
25171	surface seawater	Arabian Sea	natural seawater agar	pH 7.2–7.4; supplemented with 0.05 % peptone (w/v; BD Difco) and 0.01 % yeast extract (w/v; BD Difco)	10 days	30	standard 10-fold dilution plating technique

Taxonmaps

69479

Global distribution of 16S sequence KX146484 (>99% sequence identity) for Alteromonas from Microbeatlas

Aquatic Samples	590
Soil Samples	10
Animal Samples	66
Plant Samples	4
Total Samples	670

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464355v1 assembly for Alteromonas lipolytica CGMCC 1.15735	contig	GCA_014643555	1856405.15	8113186933	1856405	66.42
66792	ASM175846v1 assembly for Alteromonas lipolytica JW12	scaffold	GCA_001758465		2834723206	1856405	64.52

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25171	Alteromonas lipolytica strain JW12 16S ribosomal RNA gene, partial sequence	KX146484	1455		1856405

GC content

@ref	GC-content (mol%)	Method
25171	48.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alteromonas lipolytica JW12
NCBI: GCA_001758465

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.20	no
125439	motility	BacteriaNetⓘ	yes	69.80	no
125439	gram_stain	BacteriaNetⓘ	negative	95.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	94.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alteromonas lipolytica JW12
NCBI: GCA_001758465.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	no
125438	anaerobic	anaerobicⓘ	no	93.72	no
125438	aerobic	aerobicⓘ	yes	75.02	yes
125438	spore-forming	spore-formingⓘ	no	91.30	no
125438	thermophilic	thermophileⓘ	no	98.00	no
125438	flagellated	motile2+ⓘ	yes	87.87	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Beyond oil degradation: enzymatic potential of Alcanivorax to degrade natural and synthetic polyesters.	Zadjelovic V, Chhun A, Quareshy M, Silvano E, Hernandez-Fernaud JR, Aguilo-Ferretjans MM, Bosch R, Dorador C, Gibson MI, Christie-Oleza JA.	Environ Microbiol	10.1111/1462-2920.14947	2020
Phylogeny	Alteromonas lipolytica sp. nov., a poly-beta-hydroxybutyrate-producing bacterium isolated from surface seawater.	Shi XL, Wu YH, Jin XB, Wang CS, Xu XW	Int J Syst Evol Microbiol	10.1099/ijsem.0.001604	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25171	X. L. W. Shi, Y. H.,Jin, X. B.,Wang, C. S.,Xu, X. W.: Alteromonas lipolytica sp. nov., a poly-beta-hydroxybutyrate-producing bacterium isolated from surface seawater. IJSEM 67: 237 - 242 2017 ( DOI 10.1099/ijsem.0.001604 , PubMed 27902291 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alteromonas lipolytica (JW12, CGMCC 1.15735, KCTC 52408)

Name and taxonomic classification