Name: Marinobacter salinus Hb8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133343

Type strain:

Species: Marinobacter salinus

Strain Designation: Hb8

Culture col. no.: KCTC 52255, JCM 31416

Strain history: S.-J. Park; Dept. of Biol., Jeju Natl. Univ., South Korea; Hb8.

NCBI tax ID(s): 1874317 (species)

Special Collections

Other strains from Marinobacter salinus

Section

Marinobacter salinus Hb8 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from tidal flat environment.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacter*
	Species	**Marinobacter salinus**
	Full Scientific Name (LPSN)	Marinobacter salinus Rani et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25193]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.494

[Ref.: #25193]	Cell length	1.5-2.8 µm

[Ref.: #25193]	Cell width	0.5-0.7 µm

[Ref.: #25193]	Cell shape	rod-shaped

[Ref.: #25193]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.752

[Ref.: #25193]	Flagellum arrangement	monotrichous, polar

[Ref.: #25193]	Colony color	non-pigmented (later creamy)
[Ref.: #25193]	Colony shape	circular
[Ref.: #25193]	Incubation period	1.75 days
[Ref.: #25193]	Cultivation medium used	marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25193]

Culture medium

marine agar (MA)

[Ref.: #25193]

Culture medium growth

		Temperature
[Ref.: #25193]	growth	10.0-37.0 °C
[Ref.: #25193]	optimum	37 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #25193]			optimum	8
[Ref.: #25193]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25193]

Oxygen tolerance

aerobe

[Ref.: #25193]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #25193]

Halophily / tolerance level

moderately halophilic

	Salt	Tested relation		Salt conc.
[Ref.: #25193]	NaCl		optimum	5	%
[Ref.: #25193]	NaCl	no	growth	0	%
[Ref.: #25193]	NaCl		growth	1.0-15.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25193]	arabinose ChEBI	+	assimilation
[Ref.: #25193]	citrate ChEBI	+	assimilation
[Ref.: #25193]	esculin ChEBI	-	hydrolysis
[Ref.: #25193]	gelatin ChEBI	+	hydrolysis
[Ref.: #25193]	glucose ChEBI	+	assimilation
[Ref.: #25193]	malate ChEBI	+	assimilation
[Ref.: #25193]	mannitol ChEBI	+	assimilation
[Ref.: #25193]	mannose ChEBI	+	assimilation
[Ref.: #25193]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #25193]	nitrate ChEBI	+	reduction
[Ref.: #25193]	phenylacetate ChEBI	+	assimilation
[Ref.: #25193]	starch ChEBI	-	hydrolysis
[Ref.: #25193]	tryptophan ChEBI	-	energy source
[Ref.: #25193]	tween 40 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25193]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25193]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25193]	acid phosphatase	-	3.1.3.2
[Ref.: #25193]	alkaline phosphatase	-	3.1.3.1
[Ref.: #25193]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25193]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25193]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25193]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25193]	beta-glucosidase	-	3.2.1.21
[Ref.: #25193]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25193]	catalase	+	1.11.1.6
[Ref.: #25193]	cystine arylamidase	-	3.4.11.3
[Ref.: #25193]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25193]	esterase (C 4)	+
[Ref.: #25193]	lipase	+
[Ref.: #25193]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25193]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #25193]	trypsin	-	3.4.21.4
[Ref.: #25193]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25193]	urease	-	3.5.1.5
[Ref.: #25193]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25193]	Sample type/isolated from	tidal flat environment
[Ref.: #25193]	Geographic location (country and/or sea, region)	Gunsan
[Ref.: #25193]	Country	Republic of Korea
[Ref.: #25193]	Country ISO 3 Code	KOR
[Ref.: #25193]	Continent	Asia
[Ref.: #25193]	Geographic location	36.0000°/126.0000°
[Ref.: #25193]	Enrichment culture	marine 2216 agar (MA) plates
[Ref.: #25193]	Enrichment culture duration	7 days
[Ref.: #25193]	Enrichment culture temperature	25 ̊C
[Ref.: #25193]	Isolation/enrichment procedure	serially diluted with natural sea water and filtered (0.22 µm pore size)

[Ref.: #67770]	Sample type/isolated from	Tidal flat sediment at Gunsan
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX063622 (>99% sequence identity) for Marinobacter from Microbeatlas

Aquatic Samples	236
Soil Samples	87
Animal Samples	22
Plant Samples	2
Total Samples	347

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25193]	Marinobacter salinus strain Hb8 16S ribosomal RNA gene, partial sequence	KX063622	1460	GenBank ENA	1874317 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacter salinus Hb8	GCA_001854125	complete	GenBank ENA	1874317 tax ID	*
[Ref.: #66792]	Marinobacter salinus Hb8	2718217953	complete	JGI IMG/M	1874317 tax ID	*

[Ref.: #25193]	GC-content	54.51 mol%	sequence analysis
[Ref.: #67770]	GC-content	54.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinobacter salinus Hb8 NCBI: GCA_001854125.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinobacter salinus Hb8 NCBI: GCA_001854125.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.494	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.835	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	73.616	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.715	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	100	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	92.752	yes

Availability in culture collections External links

[Ref.: #25193]

Culture collection no.

KCTC 52255, JCM 31416

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter salinus sp. nov., a moderately halophilic bacterium isolated from a tidal flat environment.	Rani S, Koh HW, Kim H, Rhee SK, Park SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001587	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25193

S. K. Rani, H. W.,Kim, H.,Rhee, S. K.,Park, S. J.: Marinobacter salinus sp. nov., a moderately halophilic bacterium isolated from a tidal flat environment. IJSEM 67: 205 - 211 2017 ( DOI 10.1099/ijsem.0.001587 , PubMed 27902222 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Marinobacter salinus in external resources:
SILVA
BRENDA
PANGAEA
GBIF