Name: Marinobacter salinus Hb8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133343

Type strain:

Species: Marinobacter salinus

Strain Designation: Hb8

Culture col. no.: KCTC 52255, JCM 31416

Strain history: S.-J. Park; Dept. of Biol., Jeju Natl. Univ., South Korea; Hb8.

NCBI tax ID(s): 1874317 (species)

Special Collections

Other strains from Marinobacter salinus

Section

When using BacDive for research please cite our paper

Marinobacter salinus Hb8 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from tidal flat environment.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacter*
	Species	**Marinobacter salinus**
	Full Scientific Name (LPSN)	Marinobacter salinus Rani et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25193]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %98.6
[Ref.: #125438]	Gram stain	negative Confidence in %98.494

[Ref.: #25193]	Cell length	1.5-2.8 µm

[Ref.: #25193]	Cell width	0.5-0.7 µm

[Ref.: #25193]	Cell shape	rod-shaped

[Ref.: #25193]	Motility	yes
[Ref.: #125438]	Motility	yes Confidence in %92.752

[Ref.: #25193]	Flagellum arrangement	monotrichous, polar

[Ref.: #25193]	Colony color	non-pigmented (later creamy)
[Ref.: #25193]	Colony shape	circular
[Ref.: #25193]	Incubation period	1.75 days
[Ref.: #25193]	Cultivation medium used	marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25193]

Culture medium

marine agar (MA)

[Ref.: #25193]

Culture medium growth

		Temperature
[Ref.: #25193]	growth	10.0-37.0 °C
[Ref.: #25193]	optimum	37 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #25193]			optimum	8
[Ref.: #25193]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25193]

Oxygen tolerance

aerobe

[Ref.: #25193]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %94.5

[Ref.: #25193]

Halophily / tolerance level

moderately halophilic

	Salt	Tested relation		Salt conc.
[Ref.: #25193]	NaCl		optimum	5	%
[Ref.: #25193]	NaCl	no	growth	0	%
[Ref.: #25193]	NaCl		growth	1.0-15.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25193]	arabinose ChEBI	+	assimilation
[Ref.: #25193]	citrate ChEBI	+	assimilation
[Ref.: #25193]	esculin ChEBI	-	hydrolysis
[Ref.: #25193]	gelatin ChEBI	+	hydrolysis
[Ref.: #25193]	glucose ChEBI	+	assimilation
[Ref.: #25193]	malate ChEBI	+	assimilation
[Ref.: #25193]	mannitol ChEBI	+	assimilation
[Ref.: #25193]	mannose ChEBI	+	assimilation
[Ref.: #25193]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #25193]	nitrate ChEBI	+	reduction
[Ref.: #25193]	phenylacetate ChEBI	+	assimilation
[Ref.: #25193]	starch ChEBI	-	hydrolysis
[Ref.: #25193]	tryptophan ChEBI	-	energy source
[Ref.: #25193]	tween 40 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25193]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25193]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25193]	acid phosphatase	-	3.1.3.2
[Ref.: #25193]	alkaline phosphatase	-	3.1.3.1
[Ref.: #25193]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25193]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25193]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25193]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25193]	beta-glucosidase	-	3.2.1.21
[Ref.: #25193]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25193]	catalase	+	1.11.1.6
[Ref.: #25193]	cystine arylamidase	-	3.4.11.3
[Ref.: #25193]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25193]	esterase (C 4)	+
[Ref.: #25193]	lipase	+
[Ref.: #25193]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25193]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #25193]	trypsin	-	3.4.21.4
[Ref.: #25193]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25193]	urease	-	3.5.1.5
[Ref.: #25193]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25193]	Sample type/isolated from	tidal flat environment
[Ref.: #25193]	Geographic location (country and/or sea, region)	Gunsan
[Ref.: #25193]	Country	Republic of Korea
[Ref.: #25193]	Country ISO 3 Code	KOR
[Ref.: #25193]	Continent	Asia
[Ref.: #25193]	Geographic location	36.0000°/126.0000°
[Ref.: #25193]	Enrichment culture	marine 2216 agar (MA) plates
[Ref.: #25193]	Enrichment culture duration	7 days
[Ref.: #25193]	Enrichment culture temperature	25 ̊C
[Ref.: #25193]	Isolation/enrichment procedure	serially diluted with natural sea water and filtered (0.22 µm pore size)

[Ref.: #67770]	Sample type/isolated from	Tidal flat sediment at Gunsan
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX063622 (>99% sequence identity) for Marinobacter from Microbeatlas

Aquatic Samples	236
Soil Samples	87
Animal Samples	22
Plant Samples	2
Total Samples	347

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25193]	Marinobacter salinus strain Hb8 16S ribosomal RNA gene, partial sequence	KX063622	1460	GenBank ENA	1874317 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacter salinus Hb8	GCA_001854125	complete	GenBank ENA	1874317 tax ID	*
[Ref.: #66792]	Marinobacter salinus Hb8	2718217953	complete	JGI IMG/M	1874317 tax ID	*

[Ref.: #25193]	GC-content	54.51 mol%	sequence analysis
[Ref.: #67770]	GC-content	54.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacter salinus Hb8 NCBI: GCA_001854125.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98.494	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	92.835	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	73.616	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	88.715	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	100	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	92.752	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinobacter salinus Hb8 IMG: 2718217953
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	94.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	81.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	85.8

Availability in culture collections External links

[Ref.: #25193]

Culture collection no.

KCTC 52255, JCM 31416

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter salinus sp. nov., a moderately halophilic bacterium isolated from a tidal flat environment.	Rani S, Koh HW, Kim H, Rhee SK, Park SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001587	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25193

S. K. Rani, H. W.,Kim, H.,Rhee, S. K.,Park, S. J.: Marinobacter salinus sp. nov., a moderately halophilic bacterium isolated from a tidal flat environment. IJSEM 67: 205 - 211 2017 ( DOI 10.1099/ijsem.0.001587 , PubMed 27902222 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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