Name: Terrimonas rhizosphaerae CR94
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133334

Type strain:

Species: Terrimonas rhizosphaerae

Strain Designation: CR94

Culture col. no.: KACC 17564, NCAIM B 025317

NCBI tax ID(s): 624405 (species)

Special Collections

Literature strains

Section

When using BacDive for research please cite our paper

Terrimonas rhizosphaerae CR94 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from ginseng rhizosphere soil.

colony-forming
Gram-negative
rod-shaped
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Terrimonas*
	Species	**Terrimonas rhizosphaerae**
	Full Scientific Name (LPSN)	Terrimonas rhizosphaerae Han et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25212]	Gram stain	negative

[Ref.: #25212]	Cell shape	rod-shaped

[Ref.: #25212]	Motility	no

[Ref.: #25212]	Colony size	1.0-2.0 mm
[Ref.: #25212]	Colony color	white
[Ref.: #25212]	Colony shape	circular
[Ref.: #25212]	Incubation period	3 days
[Ref.: #25212]	Cultivation medium used	10-1 nutrient agar (NA)

[Ref.: #25212]	Pigment production	no
[Ref.: #25212]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25212]

Culture medium

10-1 nutrient agar (NA)

[Ref.: #25212]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25212]			growth	10.0-37.0 °C
[Ref.: #25212]			optimum	28 °C

	pH	Kind of pH		pH
[Ref.: #25212]			optimum	6
[Ref.: #25212]			growth	4.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25212]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25212]		NaCl		optimum	0	%
[Ref.: #25212]		NaCl		growth	0.0-1.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25212]	adipate ChEBI	-	assimilation
[Ref.: #25212]	amygdalin ChEBI	+	builds acid from
[Ref.: #25212]	arabinose ChEBI	+	assimilation
[Ref.: #25212]	arbutin ChEBI	+	builds acid from
[Ref.: #25212]	butyrate ChEBI	-	assimilation
[Ref.: #25212]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #25212]	casein	-	hydrolysis
[Ref.: #25212]	cellobiose ChEBI	+	builds acid from
[Ref.: #25212]	chitin ChEBI	-	hydrolysis
[Ref.: #25212]	citrate ChEBI	-	assimilation
[Ref.: #25212]	D-arabinose ChEBI	+	builds acid from
[Ref.: #25212]	D-arabitol ChEBI	+	builds acid from
[Ref.: #25212]	D-fructose ChEBI	+	builds acid from
[Ref.: #25212]	D-fucose ChEBI	+	builds acid from
[Ref.: #25212]	D-galactose ChEBI	+	builds acid from
[Ref.: #25212]	D-glucose ChEBI	+	builds acid from
[Ref.: #25212]	D-lyxose ChEBI	+	builds acid from
[Ref.: #25212]	D-mannitol ChEBI	-	builds acid from
[Ref.: #25212]	D-mannose ChEBI	+	builds acid from
[Ref.: #25212]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #25212]	D-tagatose ChEBI	+	builds acid from
[Ref.: #25212]	D-xylose ChEBI	+	builds acid from
[Ref.: #25212]	dna ChEBI	+	hydrolysis
[Ref.: #25212]	erythritol ChEBI	+	builds acid from
[Ref.: #25212]	galactitol ChEBI	+	builds acid from
[Ref.: #25212]	gelatin ChEBI	-	hydrolysis
[Ref.: #25212]	gentiobiose ChEBI	+	builds acid from
[Ref.: #25212]	gluconate ChEBI	-	assimilation
[Ref.: #25212]	glucose ChEBI	+	assimilation
[Ref.: #25212]	glycerol ChEBI	-	builds acid from
[Ref.: #25212]	glycogen ChEBI	+	builds acid from
[Ref.: #25212]	indole ChEBI	+	assimilation
[Ref.: #25212]	inulin ChEBI	+	builds acid from
[Ref.: #25212]	L-arabinose ChEBI	+	builds acid from
[Ref.: #25212]	L-arabitol ChEBI	+	builds acid from
[Ref.: #25212]	L-fucose ChEBI	+	builds acid from
[Ref.: #25212]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #25212]	L-sorbose ChEBI	+	builds acid from
[Ref.: #25212]	L-xylose ChEBI	+	builds acid from
[Ref.: #25212]	lactose ChEBI	+	builds acid from
[Ref.: #25212]	malate ChEBI	-	assimilation
[Ref.: #25212]	maltose ChEBI	+	assimilation
[Ref.: #25212]	maltose ChEBI	+	builds acid from
[Ref.: #25212]	mannitol ChEBI	+	assimilation
[Ref.: #25212]	mannose ChEBI	+	assimilation
[Ref.: #25212]	melezitose ChEBI	+	builds acid from
[Ref.: #25212]	melibiose ChEBI	+	builds acid from
[Ref.: #25212]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #25212]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #25212]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #25212]	myo-inositol ChEBI	+	builds acid from
[Ref.: #25212]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #25212]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #25212]	nitrate ChEBI	+	reduction
[Ref.: #25212]	phenylacetate ChEBI	-	assimilation
[Ref.: #25212]	raffinose ChEBI	+	builds acid from
[Ref.: #25212]	ribitol ChEBI	+	builds acid from
[Ref.: #25212]	salicin ChEBI	+	builds acid from
[Ref.: #25212]	starch ChEBI	+	hydrolysis
[Ref.: #25212]	starch ChEBI	+	builds acid from
[Ref.: #25212]	sucrose ChEBI	+	builds acid from
[Ref.: #25212]	trehalose ChEBI	+	builds acid from
[Ref.: #25212]	tryptophan ChEBI	-	energy source
[Ref.: #25212]	turanose ChEBI	+	builds acid from
[Ref.: #25212]	tween 80 ChEBI	-	hydrolysis
[Ref.: #25212]	xylitol ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25212]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25212]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25212]	acid phosphatase	+	3.1.3.2
[Ref.: #25212]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25212]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #25212]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25212]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25212]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25212]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25212]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25212]	beta-galactosidase	-	3.2.1.23
[Ref.: #25212]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25212]	catalase	-	1.11.1.6
[Ref.: #25212]	cystine arylamidase	-	3.4.11.3
[Ref.: #25212]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25212]	esterase (C 4)	-
[Ref.: #25212]	esterase Lipase (C 8)	-
[Ref.: #25212]	leucine arylamidase	+	3.4.11.1
[Ref.: #25212]	lipase (C 14)	-
[Ref.: #25212]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25212]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25212]	trypsin	+	3.4.21.4
[Ref.: #25212]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25212]	urease	-	3.5.1.5
[Ref.: #25212]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25212]

Fatty acid	Percentage
C15:1 iso	37.8
C15:0 iso	27.9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25212]	Sample type/isolated from	ginseng rhizosphere soil
[Ref.: #25212]	Geographic location (country and/or sea, region)	Geumsan
[Ref.: #25212]	Country	Republic of Korea
[Ref.: #25212]	Country ISO 3 Code	KOR
[Ref.: #25212]	Continent	Asia
[Ref.: #25212]	Geographic location	36.0000°/127.0000°
[Ref.: #25212]	Enrichment culture	10-fold dilution of nutrient broth (NB) medium (Difco)
[Ref.: #25212]	Enrichment culture composition	containing 1.2 % (w/v) agar (10-1 NA) medium
[Ref.: #25212]	Enrichment culture duration	3 days
[Ref.: #25212]	Enrichment culture temperature	28 ̊C
[Ref.: #25212]	Isolation/enrichment procedure	dispersed using a sonic oscillator;serially diluted
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ772030 (>99% sequence identity) for Terrimonas rhizosphaerae subclade from Microbeatlas

Aquatic Samples	7
Soil Samples	12
Animal Samples
Plant Samples	2
Total Samples	21

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25212]	Terrimonas rhizosphaerae strain CR94 16S ribosomal RNA gene, partial sequence	FJ772030	1408	GenBank ENA	624405 tax ID

[Ref.: #25212]

GC-content

46.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25212]

Culture collection no.

KACC 17564, NCAIM B 025317

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terrimonas rhizosphaerae sp. nov., isolated from ginseng rhizosphere soil.	Han SI, Lee YR, Kim JO, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001639	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25212

S. I. L. Han, Y. R.,Kim, J. O.,Whang, K. S.: Terrimonas rhizosphaerae sp. nov., isolated from ginseng rhizosphere soil. IJSEM 67: 391 - 395 2017 ( DOI 10.1099/ijsem.0.001639 , PubMed 27902263 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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