Name: Achromobacter aloeverae AVA-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133323

Type strain:

Species: Achromobacter aloeverae

Strain Designation: AVA-1

Culture col. no.: LMG 29108, NBRC 111463, PCU 352, TISTR 2383

NCBI tax ID(s): 1750518 (species)

Section

Achromobacter aloeverae AVA-1 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from root of Aloe vera Burm.f..

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Achromobacter*
	Species	**Achromobacter aloeverae**
	Full Scientific Name (LPSN)	Achromobacter aloeverae Kuncharoen et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25141]	Gram stain	negative

[Ref.: #25141]	Cell length	2.5-3.0 µm

[Ref.: #25141]	Cell width	0.8-1.2 µm

[Ref.: #25141]	Cell shape	rod-shaped

[Ref.: #25141]	Motility	yes

[Ref.: #25141]	Flagellum arrangement	peritrichous

[Ref.: #25141]	Colony size	1.0-2.0 mm
[Ref.: #25141]	Colony color	cream
[Ref.: #25141]	Colony shape	circular
[Ref.: #25141]	Incubation period	2 days
[Ref.: #25141]	Cultivation medium used	tryptic soy agar (TSA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25141]

Culture medium

tryptic soy agar (TSA)

[Ref.: #25141]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #25141]		growth	20.0-42.0 °C
[Ref.: #25141]		optimum	30.0-37.0 °C
[Ref.: #25141]	no	growth	45 °C
[Ref.: #25141]		growth	40 °C
[Ref.: #25141]		growth	42 °C

[Ref.: #25141]	Temperature range	mesophilic
[Ref.: #25141]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #25141]			optimum	7
[Ref.: #25141]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25141]

Oxygen tolerance

aerobe

[Ref.: #25141]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25141]		NaCl		growth	4	%(w/v)
[Ref.: #25141]		NaCl	no	growth	5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25141]	adipate ChEBI	-	assimilation
[Ref.: #25141]	arginine ChEBI	-	hydrolysis
[Ref.: #25141]	citrate ChEBI	+	assimilation
[Ref.: #25141]	D-glucose ChEBI	-	assimilation
[Ref.: #25141]	D-mannitol ChEBI	-	assimilation
[Ref.: #25141]	D-mannose ChEBI	-	assimilation
[Ref.: #25141]	decanoate ChEBI	-	assimilation
[Ref.: #25141]	esculin ChEBI	-	hydrolysis
[Ref.: #25141]	gelatin ChEBI	-	hydrolysis
[Ref.: #25141]	glucose ChEBI	-	fermentation
[Ref.: #25141]	L-arabinose ChEBI	-	assimilation
[Ref.: #25141]	L-malate ChEBI	-	assimilation
[Ref.: #25141]	maltose ChEBI	-	assimilation
[Ref.: #25141]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25141]	nitrate ChEBI	-	reduction
[Ref.: #25141]	phenylacetate ChEBI	-	assimilation
[Ref.: #25141]	potassium gluconate ChEBI	-	assimilation
[Ref.: #25141]	tryptophan ChEBI	+	energy source
[Ref.: #25141]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25141]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25141]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #25141]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #25141]	acid phosphatase	+	3.1.3.2
[Ref.: #25141]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25141]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25141]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25141]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25141]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25141]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25141]	beta-galactosidase	-	3.2.1.23
[Ref.: #25141]	beta-glucosidase	-	3.2.1.21
[Ref.: #25141]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25141]	catalase	+	1.11.1.6
[Ref.: #25141]	cystine arylamidase	-	3.4.11.3
[Ref.: #25141]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25141]	esterase (C 4)	+
[Ref.: #25141]	esterase Lipase (C 8)	+
[Ref.: #25141]	leucine arylamidase	+	3.4.11.1
[Ref.: #25141]	lipase (C 14)	+
[Ref.: #25141]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25141]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25141]	trypsin	+	3.4.21.4
[Ref.: #25141]	tryptophan deaminase	+	4.1.99.1
[Ref.: #25141]	urease	+	3.5.1.5
[Ref.: #25141]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25141]

Fatty acid	Percentage	ECL
C16:0	33.73
C16:1ω7c / C16:1ω6c	27.28
cyclo C17:0	10.52
C18:1ω7c / C18:1ω6c	8.11
C14:0 3OH / C16:1 iso I	7.28	11
C18:0	4.48
C16:0 2OH	3.53
C12:0 2OH	2.54
C14:0	0.52
C17:0	0.38
C16:0 3OH	0.23
C12:0	0.21

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25141]	Sample type/isolated from	root of Aloe vera Burm.f.
[Ref.: #25141]	Geographic location (country and/or sea, region)	Chachoengsao Province
[Ref.: #25141]	Country	Thailand
[Ref.: #25141]	Country ISO 3 Code	THA
[Ref.: #25141]	Continent	Asia
[Ref.: #25141]	Enrichment culture	Starch Casein Agar medium
[Ref.: #25141]	Enrichment culture composition	supplemented with 50 mg l-1 of cycloheximide and 25 mg l-1 of penicillin
[Ref.: #25141]	Enrichment culture duration	7 days
[Ref.: #25141]	Enrichment culture temperature	30 ̊C
[Ref.: #25141]	Isolation/enrichment procedure	surface sterilization method modified of Hallmann et al.
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25141]	Achromobacter aloeverae gene for 16S ribosomal RNA, partial sequence, strain: AVA-1	LC094463	1419	GenBank	1750518 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Achromobacter aloeverae AVA-1	GCA_004121055	contig	GenBank	1750518 tax ID	*
[Ref.: #66792]	Achromobacter aloeverae AVA-1	2881412998	draft	JGI IMG/M	1750518 tax ID	*

[Ref.: #25141]

GC-content

66.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25141]

Culture collection no.

LMG 29108, NBRC 111463, PCU 352, TISTR 2383

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Achromobacter aloeverae sp. nov., isolated from the root of Aloe vera (L.) Burm.f.	Kuncharoen N, Muramatsu Y, Shibata C, Kamakura Y, Nakagawa Y, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001566	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25141

N. M. Kuncharoen, Y.,Shibata, C.,Kamakura, Y.,Nakagawa, Y.,Tanasupawat, S.: Achromobacter aloeverae sp. nov., isolated from the root of Aloe vera (L.) Burm.f. IJSEM 67: 37 - 41 2017 ( DOI 10.1099/ijsem.0.001566 , PubMed 27902206 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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