Name: Olivibacter composti CC-KYC063
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133318

Type strain:

Species: Olivibacter composti

Strain Designation: CC-KYC063

Culture col. no.: BCRC 80939, JCM 31198

Strain history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-KYC063.

NCBI tax ID(s): 1854764 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Olivibacter composti CC-KYC063 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from a compost sample collected at a greenhouse affiliated to National Chung Hsing University.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Olivibacter*
	Species	**Olivibacter composti**
	Full Scientific Name (LPSN)	Olivibacter composti Lin et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25140]	Gram stain	negative

[Ref.: #25140]	Cell length	0.8-1.0 µm

[Ref.: #25140]	Cell width	0.5-0.6 µm

[Ref.: #25140]	Cell shape	rod-shaped

[Ref.: #25140]	Motility	no

[Ref.: #25140]	Colony size	1-2 mm
[Ref.: #25140]	Colony color	yellowish
[Ref.: #25140]	Colony shape	circular
[Ref.: #25140]	Incubation period	2 days
[Ref.: #25140]	Cultivation medium used	NA (Nutrient Agar)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25140]

Culture medium

NA (Nutrient Agar)

[Ref.: #25140]

Culture medium growth

[Ref.: #25140]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #25140]

Culture medium growth

[Ref.: #25140]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #25140]

Culture medium growth

		Temperature
[Ref.: #25140]	growth	15-37 °C
[Ref.: #25140]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #25140]			optimum	7
[Ref.: #25140]			growth	7.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25140]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25140]		NaCl		optimum	0	%
[Ref.: #25140]		NaCl		growth	0-2	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25140]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #25140]	acetate ChEBI	+	carbon source
[Ref.: #25140]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #25140]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #25140]	alpha-lactose ChEBI	+	carbon source
[Ref.: #25140]	cellobiose ChEBI	+	carbon source
[Ref.: #25140]	D-fructose ChEBI	+	carbon source
[Ref.: #25140]	D-galactose ChEBI	+	carbon source
[Ref.: #25140]	D-gluconate ChEBI	+	carbon source
[Ref.: #25140]	D-glucosaminic acid ChEBI	+	carbon source
[Ref.: #25140]	D-glucose ChEBI	+	assimilation
[Ref.: #25140]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #25140]	D-mannitol ChEBI	-	assimilation
[Ref.: #25140]	D-mannitol ChEBI	+	carbon source
[Ref.: #25140]	D-mannose ChEBI	+	carbon source
[Ref.: #25140]	D-mannose ChEBI	+	assimilation
[Ref.: #25140]	dextrin ChEBI	+	carbon source
[Ref.: #25140]	esculin ChEBI	+	hydrolysis
[Ref.: #25140]	gelatin ChEBI	+	hydrolysis
[Ref.: #25140]	gentiobiose ChEBI	+	carbon source
[Ref.: #25140]	glucose 1-phosphate ChEBI	+	carbon source
[Ref.: #25140]	glucuronamide ChEBI	+	carbon source
[Ref.: #25140]	glycerol ChEBI	+	carbon source
[Ref.: #25140]	glycerol 1-phosphate ChEBI	+	carbon source
[Ref.: #25140]	hydroxyproline ChEBI	+	carbon source
[Ref.: #25140]	L-arabinose ChEBI	+	carbon source
[Ref.: #25140]	L-arabinose ChEBI	+	assimilation
[Ref.: #25140]	L-asparagine ChEBI	+	carbon source
[Ref.: #25140]	L-aspartate ChEBI	+	carbon source
[Ref.: #25140]	L-glutamate ChEBI	+	carbon source
[Ref.: #25140]	L-proline ChEBI	+	carbon source
[Ref.: #25140]	L-serine ChEBI	+	carbon source
[Ref.: #25140]	L-threonine ChEBI	+	carbon source
[Ref.: #25140]	lactate ChEBI	+	carbon source
[Ref.: #25140]	lactulose ChEBI	+	carbon source
[Ref.: #25140]	maltose ChEBI	+	carbon source
[Ref.: #25140]	maltose ChEBI	+	assimilation
[Ref.: #25140]	melibiose ChEBI	+	carbon source
[Ref.: #25140]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #25140]	monomethyl succinate ChEBI	+	carbon source
[Ref.: #25140]	N-acetylgalactosamine ChEBI	+	carbon source
[Ref.: #25140]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #25140]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #25140]	nitrate ChEBI	+	reduction
[Ref.: #25140]	raffinose ChEBI	+	carbon source
[Ref.: #25140]	ribitol ChEBI	+	carbon source
[Ref.: #25140]	sucrose ChEBI	+	carbon source
[Ref.: #25140]	trehalose ChEBI	+	carbon source
[Ref.: #25140]	turanose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #25140]	acid phosphatase	+	3.1.3.2
[Ref.: #25140]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25140]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #25140]	alpha-galactosidase	+	3.2.1.22
[Ref.: #25140]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25140]	alpha-mannosidase	+	3.2.1.24
[Ref.: #25140]	beta-galactosidase	-	3.2.1.23
[Ref.: #25140]	beta-glucosidase	+	3.2.1.21
[Ref.: #25140]	cystine arylamidase	+	3.4.11.3
[Ref.: #25140]	esterase (C 4)	+
[Ref.: #25140]	esterase Lipase (C 8)	+
[Ref.: #25140]	leucine arylamidase	+	3.4.11.1
[Ref.: #25140]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #25140]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25140]	trypsin	+	3.4.21.4
[Ref.: #25140]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25140]

Fatty acid	Percentage
C16:1ω6c / C16:1ω7c	35
C15:0 iso	27.7
C17:0 iso 3OH	15.1
C15:1ω5c	3.6
C15:0 iso 3OH	3
10-Methyl C16:0 / iso-C17:1ω9c	2.8
C16:0	2.7
C16:0 2OH	1.9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25140]	Sample type/isolated from	a compost sample collected at a greenhouse affiliated to National Chung Hsing University
[Ref.: #25140]	Geographic location (country and/or sea, region)	Taichung, Taiwan
[Ref.: #25140]	Country	Taiwan, Province of China
[Ref.: #25140]	Country ISO 3 Code	TWN
[Ref.: #25140]	Continent	Asia
[Ref.: #25140]	Geographic location	24.0000°/121.0000°

[Ref.: #67770]	Sample type/isolated from	Compost collected at a greenhouse
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Greenhouse
#Engineered	#Biodegradation	#Composting

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25140]	Olivibacter composti strain CC-KYC063 16S ribosomal RNA gene, partial sequence	KU358715	1465	GenBank ENA	1854764 tax ID

[Ref.: #25140]

GC-content

43 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25140]

Culture collection no.

BCRC 80939, JCM 31198

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Olivibacter composti sp. nov., isolated from compost collected at a greenhouse.	Lin SY, Hameed A, Chiu KY, Liu YC, Hsu YH, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001593	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25140

S. Y. H. Lin, A.,Chiu, K. Y.,Liu, Y. C.,Hsu, Y. H.,Lai, W. A.,Young, C. C.: Olivibacter composti sp. nov., isolated from compost collected at a greenhouse. IJSEM 67: 148 - 152 2017 ( DOI 10.1099/ijsem.0.001593 , PubMed 28211312 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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