Name: Nonlabens halophilus KCTC 52177
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133316

Type strain:

Species: Nonlabens halophilus

Culture col. no.: KCTC 52177, NBRC 111996, CAU 1131

Strain history: <- Wonyong Kim, Chung-Ang Univ..

NCBI tax ID(s): 1854709 (species)

Section

Nonlabens halophilus KCTC 52177 is an anaerobe bacterium that forms circular colonies and was isolated from reclaimed land collected from Modo in the Republic of Korea.

colony-forming
anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Nonlabens*
	Species	**Nonlabens halophilus**
	Full Scientific Name (LPSN)	Nonlabens halophilus Oh et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25158]	Colony color	orange
[Ref.: #25158]	Colony shape	circular
[Ref.: #25158]	Incubation period	3 days
[Ref.: #25158]	Cultivation medium used	MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25158]

Culture medium

Marine agar (MA)

[Ref.: #25158]

Culture medium growth

		Temperature
[Ref.: #25158]	growth	10-37 °C
[Ref.: #25158]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #25158]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25158]			optimum	6.5
[Ref.: #25158]			growth	5.5-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25158]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #25158]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25158]		NaCl		optimum	2	%
[Ref.: #25158]		NaCl		growth	0-5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25158]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #25158]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #25158]	adipate ChEBI	-	assimilation
[Ref.: #25158]	D-arabitol ChEBI	-	assimilation
[Ref.: #25158]	D-fucose ChEBI	-	assimilation
[Ref.: #25158]	D-glucose ChEBI	-	carbon source
[Ref.: #25158]	D-lyxose ChEBI	+	builds acid from
[Ref.: #25158]	D-lyxose ChEBI	+	carbon source
[Ref.: #25158]	D-mannitol ChEBI	+	assimilation
[Ref.: #25158]	D-mannose ChEBI	-	assimilation
[Ref.: #25158]	D-ribose ChEBI	+	carbon source
[Ref.: #25158]	D-sorbitol ChEBI	+	assimilation
[Ref.: #25158]	D-tagatose ChEBI	+	builds acid from
[Ref.: #25158]	D-xylose ChEBI	+	carbon source
[Ref.: #25158]	erythritol ChEBI	-	assimilation
[Ref.: #25158]	esculin ChEBI	+	hydrolysis
[Ref.: #25158]	galactitol ChEBI	-	assimilation
[Ref.: #25158]	gelatin ChEBI	+	hydrolysis
[Ref.: #25158]	L-arabinose ChEBI	-	assimilation
[Ref.: #25158]	L-arabitol ChEBI	-	assimilation
[Ref.: #25158]	L-fucose ChEBI	-	assimilation
[Ref.: #25158]	L-rhamnose ChEBI	+	assimilation
[Ref.: #25158]	L-sorbose ChEBI	-	assimilation
[Ref.: #25158]	L-xylose ChEBI	-	assimilation
[Ref.: #25158]	malate ChEBI	-	assimilation
[Ref.: #25158]	maltose ChEBI	-	assimilation
[Ref.: #25158]	melezitose ChEBI	-	assimilation
[Ref.: #25158]	methyl beta-D-xylopyranoside ChEBI	-	assimilation
[Ref.: #25158]	myo-inositol ChEBI	+	assimilation
[Ref.: #25158]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25158]	phenylacetate ChEBI	-	assimilation
[Ref.: #25158]	ribitol ChEBI	-	assimilation
[Ref.: #25158]	sodium citrate ChEBI	-	assimilation
[Ref.: #25158]	sucrose ChEBI	-	builds acid from
[Ref.: #25158]	sucrose ChEBI	-	carbon source
[Ref.: #25158]	xylitol ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #25158]	amoxicillin ChEBI	yes	20	µg (disc)
[Ref.: #25158]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #25158]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #25158]	cefalotin ChEBI	yes	30	µg (disc)
[Ref.: #25158]	cefoxitin ChEBI	yes	30	µg (disc)
[Ref.: #25158]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #25158]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #25158]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #25158]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #25158]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #25158]	penicillin ChEBI	yes	10	Unit
[Ref.: #25158]	polymyxin b ChEBI	yes	300	Unit
[Ref.: #25158]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #25158]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #25158]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #25158]	tobramycin ChEBI	yes	10	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #25158]		26	sulfamethoxazole ChEBI	yes	23.75	µg (disc)
[Ref.: #25158]		26	trimethoprim ChEBI	yes	1.25	µg (disc)

	Enzyme	Enzyme activity	EC number
[Ref.: #25158]	acid phosphatase	+	3.1.3.2
[Ref.: #25158]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25158]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25158]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25158]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25158]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25158]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25158]	beta-galactosidase	-	3.2.1.23
[Ref.: #25158]	beta-glucosidase	-	3.2.1.21
[Ref.: #25158]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25158]	catalase	+	1.11.1.6
[Ref.: #25158]	cystine arylamidase	-	3.4.11.3
[Ref.: #25158]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25158]	esterase (C 4)	+
[Ref.: #25158]	esterase Lipase (C 8)	+
[Ref.: #25158]	leucine arylamidase	-	3.4.11.1
[Ref.: #25158]	lipase (C 14)	+
[Ref.: #25158]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25158]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25158]	trypsin	-	3.4.21.4
[Ref.: #25158]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25158]

Fatty acid	Percentage
C17:0 iso 3OH	17.84
C16:1ω7c / C16:1ω6c	17.71
C15:0 iso	14.12
C15:0 iso 3OH	7.3
C15:0 anteiso	5.67
C17:0 2OH	5.27
C16:0 iso 3OH	4.56
C17:1 iso ω9c	4.55
C17:1 anteiso ω9c	3.84
C15:0 2OH	2.99
C17:1ω6c	2.7
C16:0 3OH	2.63
C16:0 iso	1.55
C16:1 iso H	1.38
C15:1ω6c	1.31
C16:0	1.05

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25158]	Sample type/isolated from	reclaimed land collected from Modo in the Republic of Korea
[Ref.: #25158]	Geographic location (country and/or sea, region)	Modo-ri, Uisin-myeon,Jindo, Jeollanam-do, South Korea
[Ref.: #25158]	Country	Republic of Korea
[Ref.: #25158]	Country ISO 3 Code	KOR
[Ref.: #25158]	Continent	Asia
[Ref.: #25158]	Geographic location	34.4060°/126.3550°

[Ref.: #67771]	Sample type/isolated from	From soil of Modo
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU719509 (>99% sequence identity) for Nonlabens halophilus subclade from Microbeatlas

Aquatic Samples	169
Soil Samples	5
Animal Samples	6
Plant Samples
Total Samples	180

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25158]	16S rRNA gene sequence	KU719509	1504	ENA	1854709 tax ID

[Ref.: #25158]

GC-content

38.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25158]

Culture collection no.

KCTC 52177, NBRC 111996, CAU 1131

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nonlabens xiamenensis sp. nov., isolated from coastal seawater.	Huang Z, Du Y, Lai Q, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-019-01258-8	2019	*
Phylogeny	Nonlabens halophilus sp. nov., isolated from reclaimed land.	Oh M, Kim JH, Bora N, Kim W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001590	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25158

M. K. Oh, J. H.,Bora, N.,Kim, W.: Nonlabens halophilus sp. nov., isolated from reclaimed land. IJSEM 67: 138 - 143 2017 ( DOI 10.1099/ijsem.0.001590 , PubMed 27902210 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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