Pseudonocardia autotrophica (DSM 43088, IMRU 1299, NRRL B-16063)

Name: Pseudonocardia autotrophica (DSM 43088, IMRU 1299, NRRL B-16063)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13331

Type strain

Strain Designation 3300

Culture col. no. DSM 43088 IMRU 1299 NRRL B-16063 3300

NCBI tax ID(s) 2074

Special Collections DSMZ

History <- R.E. Gordon, IMRU <- N.F. Conant, 3300 (Streptomyces sp.)

Links

Pseudonocardia autotrophica 3300 is a bacterium that was isolated from corneal ulcer.

Bacteria

Name and taxonomic classification

SI-ID 50153

DSM 43088,NRRL B-16063,KCTC 9449,CGMCC 4.1318

@ref 20215

Last LPSN update 2026-02-09 11:21:06

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Pseudonocardia

Species Pseudonocardia autotrophica

Full scientific name Pseudonocardia autotrophica (Takamiya and Tubaki 1956) Warwick et al. 1994

Synonyms (4)

Nocardia autotrophica
"Proactinomyces autotrophicus"
"Streptomyces autotrophicus"
Amycolata autotrophica

BacDive ID	Other strains from **Pseudonocardia autotrophica** (29)	Type strain
13324	P. autotrophica 394, Kodai, DSM 535, ATCC 19727, CBS 466.68, ... (type strain)
13325	P. autotrophica DSM 43082, IMRU 418, NRRL B-1365
13326	P. autotrophica 543, DSM 43083, IMRU 543
13327	P. autotrophica DSM 43084, IMRU 703
13328	P. autotrophica 9964 A, DSM 43085, IMRU 704
13329	P. autotrophica DSM 43086, IMRU 1105
13330	P. autotrophica A 588, DSM 43087, IMRU 1124
13332	P. autotrophica F354, DSM 43090, IMRU 1309
13333	P. autotrophica 8 (unidentified isolate), DSM 43091, IMRU ...
13334	P. autotrophica U4, DSM 43093, IMRU 1334
13335	P. autotrophica 7-34, DSM 43094, IMRU 1335
13336	P. autotrophica Boots Pure Drug Co., strain 116, 116, Boots ...
13337	P. autotrophica DSM 43096, DSM 43190, IMRU 1338, NCIB 9574
13338	P. autotrophica B-831a, DSM 43097, IMRU 1357
13339	P. autotrophica DSM 43098, DSM 652, IMRU 1398
13340	P. autotrophica DSM 43099, IMRU 1446, NRRL B-16065, RM 66A
13341	P. autotrophica 147, DSM 43100, IMRU 1523
13342	P. autotrophica G-216, DSM 43101, IMRU 1528
13343	P. autotrophica W 1961, DSM 43102, IMRU 1576
13344	P. autotrophica W 1962, DSM 43103, DSM 43211, DSM 651, IMRU ...
13345	P. autotrophica W 1963, DSM 43104, IMRU 1578
13346	P. autotrophica W 1995, DSM 43105, IMRU 1579
13347	P. autotrophica N 37, DSM 43106, IMRU 1597
13348	P. autotrophica CM 1512, DSM 43107, IMRU 1598
13349	P. autotrophica DSM 43108, IMRU 3520
13350	P. autotrophica DSM 43128, LBG A 3006, ETH 24301
13351	P. autotrophica DSM 43558, CBS 605.67, SN 6600
105408	P. autotrophica ST033331(HKI),
164922	P. autotrophica JCM 4010, KCTC 9567, VKM Ac-1067

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10751	GYM+S MEDIUM (DSMZ Medium 214)		Medium recipe at MediaDive	Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10751	positive	growth	28

Physiology and metabolism

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	valine metabolism	100	9 of 9
66794	adipate degradation	100	2 of 2
66794	gallate degradation	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	CMP-KDO biosynthesis	100	4 of 4
66794	cardiolipin biosynthesis	100	7 of 7
66794	Entner Doudoroff pathway	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	ethanol fermentation	100	2 of 2
66794	octane oxidation	100	3 of 3
66794	enterobactin biosynthesis	100	3 of 3
66794	phenylmercury acetate degradation	100	2 of 2
66794	resorcinol degradation	100	2 of 2
66794	IAA biosynthesis	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	photosynthesis	100	14 of 14
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	glycine betaine biosynthesis	100	5 of 5
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	cyanate degradation	100	3 of 3
66794	taurine degradation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	citric acid cycle	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	propionate fermentation	90	9 of 10
66794	myo-inositol biosynthesis	90	9 of 10
66794	phenol degradation	90	18 of 20
66794	threonine metabolism	90	9 of 10
66794	serine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	ketogluconate metabolism	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	purine metabolism	84.04	79 of 94
66794	NAD metabolism	83.33	15 of 18
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	pentose phosphate pathway	81.82	9 of 11
66794	methionine metabolism	80.77	21 of 26
66794	3-phenylpropionate degradation	80	12 of 15
66794	factor 420 biosynthesis	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	starch degradation	80	8 of 10
66794	cellulose degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	hydrogen production	80	4 of 5
66794	vitamin B12 metabolism	79.41	27 of 34
66794	tryptophan metabolism	78.95	30 of 38
66794	heme metabolism	78.57	11 of 14
66794	glutathione metabolism	78.57	11 of 14
66794	pyrimidine metabolism	77.78	35 of 45
66794	vitamin B1 metabolism	76.92	10 of 13
66794	urea cycle	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	non-pathway related	76.32	29 of 38
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	lactate fermentation	75	3 of 4
66794	toluene degradation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	oxidative phosphorylation	73.63	67 of 91
66794	proline metabolism	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	degradation of sugar acids	72	18 of 25
66794	aclacinomycin biosynthesis	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	degradation of pentoses	71.43	20 of 28
66794	tyrosine metabolism	71.43	10 of 14
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	coenzyme M biosynthesis	70	7 of 10
66794	histidine metabolism	68.97	20 of 29
66794	alanine metabolism	68.97	20 of 29
66794	degradation of sugar alcohols	68.75	11 of 16
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	methane metabolism	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	sulfoquinovose degradation	66.67	2 of 3
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	metabolism of disaccharids	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	carotenoid biosynthesis	63.64	14 of 22
66794	sulfate reduction	61.54	8 of 13
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	arginine metabolism	58.33	14 of 24
66794	degradation of hexoses	55.56	10 of 18
66794	daunorubicin biosynthesis	55.56	5 of 9
66794	glycine metabolism	50	5 of 10
66794	sphingosine metabolism	50	3 of 6
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	carnitine metabolism	50	4 of 8
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	cholesterol biosynthesis	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	allantoin degradation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	creatinine degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	ascorbate metabolism	36.36	8 of 22
66794	polyamine pathway	34.78	8 of 23
66794	chlorophyll metabolism	33.33	6 of 18
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	catecholamine biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Inflammation	-
#Host Body-Site	#Organ	#Eye

Isolation

10751

Sample typecorneal ulcer

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
10751	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fatty acid characterization of rapidly growing pathogenic aerobic actinomycetes as a means of identification.	McNabb A, Shuttleworth R, Behme R, Colby WD.	J Clin Microbiol	10.1128/jcm.35.6.1361-1368.1997	1997

References

#10751	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43088
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudonocardia autotrophica (DSM 43088, IMRU 1299, NRRL B-16063)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome-based predictions

Literature

Literature

References

BacDive

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