Name: Pseudohongiella nitratireducens SCS-49
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133284

Type strain:

Species: Pseudohongiella nitratireducens

Strain Designation: SCS-49

Culture col. no.: CGMCC 1.15425, KCTC 52155, MCCC 1K03186

NCBI tax ID(s): 1768907 (species)

Section

Pseudohongiella nitratireducens SCS-49 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from two seawater samples .

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	"Pseudohongiellaceae"
	Genus	*Pseudohongiella*
	Species	**Pseudohongiella nitratireducens**
	Full Scientific Name (LPSN)	Pseudohongiella nitratireducens Xu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25110]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #25110]	Cell length	1.3-1.7 µm

[Ref.: #25110]	Cell width	0.5-0.7 µm

[Ref.: #25110]	Cell shape	rod-shaped

[Ref.: #25110]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %93.688

[Ref.: #25110]	Flagellum arrangement	monotrichous, polar

[Ref.: #25110]	Colony size	2 mm
[Ref.: #25110]	Colony color	pale orange
[Ref.: #25110]	Colony shape	circular
[Ref.: #25110]	Incubation period	5 days
[Ref.: #25110]	Cultivation medium used	MA (marine agar)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25110]

Culture medium

Marine agar (MA)

[Ref.: #25110]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25110]			growth	4.0-35.0 °C
[Ref.: #25110]			optimum	30 °C

[Ref.: #25110]

Temperature range

mesophilic

		pH
[Ref.: #25110]	optimum	7
[Ref.: #25110]	growth	6.5-9.0
[Ref.: #25110]	growth	6.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25110]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25110]		NaCl		growth	0.5-7.5	%(w/v)
[Ref.: #25110]		NaCl		optimum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25110]	adipate ChEBI	-	assimilation
[Ref.: #25110]	alpha-lactose ChEBI	-	builds acid from
[Ref.: #25110]	D-fructose ChEBI	-	builds acid from
[Ref.: #25110]	D-galactose ChEBI	-	builds acid from
[Ref.: #25110]	D-glucose ChEBI	-	builds acid from
[Ref.: #25110]	D-glucose ChEBI	-	assimilation
[Ref.: #25110]	D-mannose ChEBI	-	builds acid from
[Ref.: #25110]	D-mannose ChEBI	+	assimilation
[Ref.: #25110]	D-xylose ChEBI	-	builds acid from
[Ref.: #25110]	decanoate ChEBI	-	assimilation
[Ref.: #25110]	dna ChEBI	-	hydrolysis
[Ref.: #25110]	ethanol ChEBI	+	builds acid from
[Ref.: #25110]	gelatin ChEBI	-	hydrolysis
[Ref.: #25110]	glucose ChEBI	-	fermentation
[Ref.: #25110]	glycerol ChEBI	+	builds acid from
[Ref.: #25110]	L-arabinose ChEBI	-	assimilation
[Ref.: #25110]	L-arabinose ChEBI	+	builds acid from
[Ref.: #25110]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #25110]	malate ChEBI	+	assimilation
[Ref.: #25110]	maltose ChEBI	+	assimilation
[Ref.: #25110]	maltose ChEBI	+	builds acid from
[Ref.: #25110]	mannitol ChEBI	+	builds acid from
[Ref.: #25110]	myo-inositol ChEBI	-	builds acid from
[Ref.: #25110]	nitrate ChEBI	+	reduction
[Ref.: #25110]	nitrite ChEBI	-	reduction
[Ref.: #25110]	phenylacetate ChEBI	-	assimilation
[Ref.: #25110]	potassium gluconate ChEBI	-	assimilation
[Ref.: #25110]	raffinose ChEBI	-	builds acid from
[Ref.: #25110]	ribose ChEBI	+	builds acid from
[Ref.: #25110]	sodium citrate ChEBI	-	assimilation
[Ref.: #25110]	sorbose ChEBI	+	builds acid from
[Ref.: #25110]	starch ChEBI	-	hydrolysis
[Ref.: #25110]	sucrose ChEBI	-	builds acid from
[Ref.: #25110]	trehalose ChEBI	-	builds acid from
[Ref.: #25110]	tryptophan ChEBI	-	energy source
[Ref.: #25110]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25110]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25110]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25110]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity
[Ref.: #25110]	amoxicillin ChEBI	yes
[Ref.: #25110]	ampicillin ChEBI	yes
[Ref.: #25110]	bacitracin ChEBI	no
[Ref.: #25110]	carbenicillin ChEBI	yes
[Ref.: #25110]	chloramphenicol ChEBI	yes
[Ref.: #25110]	erythromycin ChEBI	yes
[Ref.: #25110]	gentamicin ChEBI	no
[Ref.: #25110]	kanamycin ChEBI	no
[Ref.: #25110]	nalidixic acid ChEBI	yes
[Ref.: #25110]	neomycin ChEBI	yes
[Ref.: #25110]	nitrofurantoin ChEBI	yes
[Ref.: #25110]	nystatin ChEBI	no
[Ref.: #25110]	penicillin g ChEBI	yes
[Ref.: #25110]	polymyxin b ChEBI	yes
[Ref.: #25110]	rifampicin ChEBI	yes
[Ref.: #25110]	streptomycin ChEBI	yes
[Ref.: #25110]	tetracycline ChEBI	yes
[Ref.: #25110]	tobramycin ChEBI	no
[Ref.: #25110]	vancomycin ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25110]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25110]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25110]	acid phosphatase	-	3.1.3.2
[Ref.: #25110]	alkaline phosphatase	-	3.1.3.1
[Ref.: #25110]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25110]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25110]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25110]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25110]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25110]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25110]	beta-galactosidase	-	3.2.1.23
[Ref.: #25110]	beta-glucosidase	-	3.2.1.21
[Ref.: #25110]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25110]	catalase	+	1.11.1.6
[Ref.: #25110]	cystine arylamidase	-	3.4.11.3
[Ref.: #25110]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25110]	esterase (C 4)	+
[Ref.: #25110]	esterase Lipase (C 8)	+
[Ref.: #25110]	leucine arylamidase	+	3.4.11.1
[Ref.: #25110]	lipase (C 14)	-
[Ref.: #25110]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25110]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #25110]	trypsin	-	3.4.21.4
[Ref.: #25110]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25110]	urease	-	3.5.1.5
[Ref.: #25110]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25110]	Sample type/isolated from	two seawater samples (LEDS1_L16CTD2; LEDS1_TSCTD7)
[Ref.: #25110]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #25110]	Geographic location	19.0000°/115.0000°
[Ref.: #25110]	Enrichment culture	MB (marine broth 2216; Difco BD)
[Ref.: #25110]	Enrichment culture composition	supplemented with Tween 40 (1.5 %, w/v)
[Ref.: #25110]	Enrichment culture duration	60 days
[Ref.: #25110]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT851540 (>99% sequence identity) for Pseudohongiella nitratireducens subclade from Microbeatlas

Aquatic Samples	758
Soil Samples	40
Animal Samples	43
Plant Samples	13
Total Samples	854

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25110]	Pseudohongiella sp. SCS-49 16S ribosomal RNA gene, complete sequence	KT851540	1527	GenBank	1768907 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudohongiella nitratireducens CGMCC 1.15425	GCA_014642795	scaffold	GenBank	1768907 tax ID	*
[Ref.: #66792]	Pseudohongiella nitratireducens SCS-49	GCA_001642735	scaffold	GenBank	1768907 tax ID	*
[Ref.: #66792]	Pseudohongiella nitratireducens strain CGMCC 1.15425	1768907.6	wgs	PATRIC	1768907 tax ID	*
[Ref.: #66792]	Pseudohongiella nitratireducens SCS-49	2744054860	draft	JGI IMG/M	1768907 tax ID	*

[Ref.: #25110]

GC-content

51.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudohongiella nitratireducens CGMCC 1.15425 NCBI: GCA_014642795.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudohongiella nitratireducens CGMCC 1.15425 NCBI: GCA_014642795.1
[Ref.: #69480]	flagellated	yes	70.492	yes
[Ref.: #69480]	gram-positive	no	98.678	yes
[Ref.: #69480]	anaerobic	no	99.301	no
[Ref.: #69480]	aerobic	yes	90.511	no
[Ref.: #69480]	halophile	yes	57.91	no
[Ref.: #69480]	spore-forming	no	96.204	no
[Ref.: #69480]	glucose-util	no	65.925	yes
[Ref.: #69480]	thermophile	no	99.162	yes
[Ref.: #69480]	motile	yes	87.435	yes
[Ref.: #69480]	glucose-ferment	no	89.885	no

Availability in culture collections External links

[Ref.: #25110]

Culture collection no.

CGMCC 1.15425, KCTC 52155, MCCC 1K03186

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudohongiellanitratireducens sp. nov., isolated from seawater, and emended description of the genus Pseudohongiella.	Xu L, Wu YH, Jian SL, Wang CS, Wu M, Cheng L, Xu XW	Int J Syst Evol Microbiol	10.1099/ijsem.0.001489	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25110

L. W. Xu, Y. H.,Jian, S. L.,Wang, C. S.,Wu, M.,Cheng, L.,Xu, X. W.: Pseudohongiella nitratireducens sp. nov., isolated from seawater, and emended description of the genus Pseudohongiella. IJSEM 66: 5155 - 5160 2016 ( DOI 10.1099/ijsem.0.001489 , PubMed 27612938 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Pseudohongiella nitratireducens CGMCC 1.15425

Pseudohongiella nitratireducens CGMCC 1.15425

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