Name: Uliginosibacterium paludis KBP-13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133283

Type strain:

Species: Uliginosibacterium paludis

Strain Designation: KBP-13

Culture col. no.: BCRC 80903, LMG 28837, KCTC 42655

NCBI tax ID(s): 1615952 (species)

Section

Uliginosibacterium paludis KBP-13 is an aerobe, chemoheterotroph, Gram-negative bacterium that forms circular colonies and was isolated from water of the Banping Lake Wetland Park.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
chemoheterotroph
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Zoogloeaceae*
	Genus	*Uliginosibacterium*
	Species	**Uliginosibacterium paludis**
	Full Scientific Name (LPSN)	Uliginosibacterium paludis Chen et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25098]	Gram stain	negative

[Ref.: #25098]	Cell length	0.8-1.0 µm

[Ref.: #25098]	Cell width	0.3-0.6 µm

[Ref.: #25098]	Cell shape	rod-shaped

[Ref.: #25098]	Motility	yes

[Ref.: #25098]	Flagellum arrangement	monotrichous, polar

[Ref.: #25098]	Colony size	0.7-1.0 mm
[Ref.: #25098]	Colony color	light yellow
[Ref.: #25098]	Colony shape	circular
[Ref.: #25098]	Incubation period	2 days
[Ref.: #25098]	Cultivation medium used	R2A agar (Reasoner's 2A agar)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25098]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #25098]

Culture medium growth

[Ref.: #25098]

Culture medium

LB (lysogeny broth) agar

[Ref.: #25098]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25098]			growth	15.0-40.0 °C
[Ref.: #25098]			optimum	30.0-40.0 °C

	pH	Kind of pH		pH
[Ref.: #25098]			optimum	6
[Ref.: #25098]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25098]

Oxygen tolerance

aerobe

[Ref.: #25098]

Nutrition type

chemoheterotroph

[Ref.: #25098]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25098]		NaCl		optimum	0	%
[Ref.: #25098]		NaCl		growth	0.0-2.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25098]	adipate ChEBI	-	assimilation
[Ref.: #25098]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #25098]	arabinose ChEBI	-	assimilation
[Ref.: #25098]	butyrate ChEBI	-	assimilation
[Ref.: #25098]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #25098]	casein	+	hydrolysis
[Ref.: #25098]	chitin ChEBI	-	hydrolysis
[Ref.: #25098]	citrate ChEBI	-	assimilation
[Ref.: #25098]	corn oil	-	hydrolysis
[Ref.: #25098]	D-galacturonic acid ChEBI	+	oxidation
[Ref.: #25098]	D-glucarate ChEBI	+	oxidation
[Ref.: #25098]	D-gluconate ChEBI	+	oxidation
[Ref.: #25098]	D-glucuronate ChEBI	+	oxidation
[Ref.: #25098]	dna ChEBI	-	hydrolysis
[Ref.: #25098]	esculin ChEBI	-	hydrolysis
[Ref.: #25098]	gelatin ChEBI	-	hydrolysis
[Ref.: #25098]	gluconate ChEBI	+	assimilation
[Ref.: #25098]	glucose ChEBI	-	fermentation
[Ref.: #25098]	glucose ChEBI	+	assimilation
[Ref.: #25098]	glucuronamide ChEBI	+	oxidation
[Ref.: #25098]	L-asparagine ChEBI	+	oxidation
[Ref.: #25098]	L-aspartate ChEBI	+	oxidation
[Ref.: #25098]	L-glutamate ChEBI	+	oxidation
[Ref.: #25098]	lecithin ChEBI	-	hydrolysis
[Ref.: #25098]	malate ChEBI	+	assimilation
[Ref.: #25098]	maltose ChEBI	-	assimilation
[Ref.: #25098]	mannitol ChEBI	-	assimilation
[Ref.: #25098]	mannose ChEBI	-	assimilation
[Ref.: #25098]	methyl pyruvate ChEBI	+	oxidation
[Ref.: #25098]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25098]	nitrate ChEBI	+	reduction
[Ref.: #25098]	phenylacetate ChEBI	-	assimilation
[Ref.: #25098]	propionate ChEBI	+	oxidation
[Ref.: #25098]	starch ChEBI	-	hydrolysis
[Ref.: #25098]	tryptophan ChEBI	-	energy source
[Ref.: #25098]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25098]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25098]	tween 60 ChEBI	+	hydrolysis
[Ref.: #25098]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #25098]	ampicillin ChEBI	yes	10	µg
[Ref.: #25098]	chloramphenicol ChEBI	yes	30	µg
[Ref.: #25098]	gentamicin ChEBI	yes	10	µg
[Ref.: #25098]	kanamycin ChEBI	yes	30	µg
[Ref.: #25098]	nalidixic acid ChEBI	yes	30	µg
[Ref.: #25098]	novobiocin ChEBI	yes	30	µg
[Ref.: #25098]	penicillin g ChEBI				yes	10	Unit
[Ref.: #25098]	rifampicin ChEBI				yes	5	µg
[Ref.: #25098]	streptomycin ChEBI	yes	10	µg
[Ref.: #25098]	tetracycline ChEBI	yes	30	µg

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #25098]		25	sulfamerazine ChEBI	yes	23.75	µg
[Ref.: #25098]		25	trimethoprim ChEBI	yes	1.25	µg

	Metabolite production	Metabolite	Production
[Ref.: #25098]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25098]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25098]	acid phosphatase	+	3.1.3.2
[Ref.: #25098]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25098]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25098]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25098]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25098]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25098]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25098]	beta-galactosidase	-	3.2.1.23
[Ref.: #25098]	beta-glucosidase	+	3.2.1.21
[Ref.: #25098]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25098]	catalase	+	1.11.1.6
[Ref.: #25098]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25098]	esterase (C 4)	+
[Ref.: #25098]	leucine arylamidase	+	3.4.11.1
[Ref.: #25098]	lipase (C 14)	-
[Ref.: #25098]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25098]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25098]	trypsin	-	3.4.21.4
[Ref.: #25098]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25098]	urease	+	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25098]	Sample type/isolated from	water of the Banping Lake Wetland Park
[Ref.: #25098]	Geographic location (country and/or sea, region)	vicinity of Kaohsiung city
[Ref.: #25098]	Country	Taiwan
[Ref.: #25098]	Country ISO 3 Code	TWN
[Ref.: #25098]	Continent	Asia
[Ref.: #25098]	Geographic location	22.0000°/120.0000°
[Ref.: #25098]	Enrichment culture	R2A agar (Reasoner's 2A agar, BD Difco)
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LN812814 (>99% sequence identity) for Uliginosibacterium paludis subclade from Microbeatlas

Aquatic Samples	423
Soil Samples	19
Animal Samples	28
Plant Samples	34
Total Samples	504

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25098]	Uliginosibacterium sp. KBP-13 partial 16S rRNA gene, strain KBP-13	LN812814	1430	GenBank	1615952 tax ID

[Ref.: #25098]

GC-content

64.1-66.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25098]

Culture collection no.

BCRC 80903, LMG 28837, KCTC 42655

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Uliginosibacterium sangjuense sp. nov., isolated from sediment of the Nakdong River.	Han JH, Baek K, Ahn YH, Lee WJ, Lee MH	Antonie Van Leeuwenhoek	10.1007/s10482-017-0946-z	2017	*
Phylogeny	Uliginosibacterium paludis sp. nov., isolated from a marsh.	Chen WM, Li YS, Chen ZH, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001481	2016	*
Phylogeny	Uliginosibacterium flavum sp. nov. isolated from an artificial lake.	Kang JY, Chun J, Jahng KY	J Microbiol	10.1007/s12275-017-7002-6	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25098

W. M. L. Chen, Y. S.,Chen, Z. H.,Young, C. C.,Sheu, S. Y.: Uliginosibacterium paludis sp. nov., isolated from a marsh. IJSEM 66: 5118 - 5123 2016 ( DOI 10.1099/ijsem.0.001481 , PubMed 27624617 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Uliginosibacterium paludis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF