Name: Bacterioplanoides pacificum sw100
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133276

Type strain:

Species: Bacterioplanoides pacificum

Strain Designation: sw100

Culture col. no.: JCM 30597, MCCC 1K00501, KCTC 42424

Strain history: X.-H. Zhang and Y. Liu; Ocean Univ. of China, China; sw100.

NCBI tax ID(s): 1171596 (species)

Section

Bacterioplanoides pacificum sw100 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from surface seawater.

colony-forming
Gram-negative
motile
vibrio-shaped
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Bacterioplanoides*
	Species	**Bacterioplanoides pacificum**
	Full Scientific Name (LPSN)	Bacterioplanoides pacificum Wang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25126]	Gram stain	negative

[Ref.: #25126]	Cell length	1.3-1.4 µm

[Ref.: #25126]	Cell width	0.3-0.4 µm

[Ref.: #25126]	Cell shape	vibrio-shaped

[Ref.: #25126]	Motility	yes

[Ref.: #25126]	Flagellum arrangement	monotrichous, polar

[Ref.: #25126]	Colony size	0.3 mm
[Ref.: #25126]	Colony color	transparent
[Ref.: #25126]	Colony shape	circular
[Ref.: #25126]	Incubation period	1 day
[Ref.: #25126]	Cultivation medium used	MA (marine agar)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25126]

Culture medium

Marine agar (MA)

[Ref.: #25126]

Culture medium growth

		Temperature
[Ref.: #25126]	growth	10.0-37.0 °C
[Ref.: #25126]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #25126]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25126]			optimum	7
[Ref.: #25126]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25126]

Oxygen tolerance

obligate aerobe

	Salt		Salt conc.
[Ref.: #25126]	NaCl	growth	0.0-11.0	%
[Ref.: #25126]	NaCl	optimum	7	%
[Ref.: #25126]	NaCl	optimum	3	%
[Ref.: #25126]	NaCl	growth	0.0-11.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25126]	(-)-quinic acid ChEBI	-	respiration
[Ref.: #25126]	2,3-butanediol ChEBI	-	respiration
[Ref.: #25126]	2-hydroxybutyrate ChEBI	-	respiration
[Ref.: #25126]	2-oxobutanoate ChEBI	-	respiration
[Ref.: #25126]	2-oxoglutarate ChEBI	-	respiration
[Ref.: #25126]	2-oxopentanoate ChEBI	-	respiration
[Ref.: #25126]	3-hydroxybutyrate ChEBI	+	respiration
[Ref.: #25126]	4-hydroxy-L-proline ChEBI	+	respiration
[Ref.: #25126]	4-hydroxybutyrate ChEBI	-	respiration
[Ref.: #25126]	4-hydroxyphenylacetic acid ChEBI	-	respiration
[Ref.: #25126]	acetate ChEBI	+	respiration
[Ref.: #25126]	adipate ChEBI	-	assimilation
[Ref.: #25126]	alpha-cyclodextrin ChEBI	-	respiration
[Ref.: #25126]	alpha-D-glucose ChEBI	-	respiration
[Ref.: #25126]	alpha-lactose ChEBI	-	respiration
[Ref.: #25126]	amygdalin ChEBI	-	builds acid from
[Ref.: #25126]	arabinose ChEBI	-	builds acid from
[Ref.: #25126]	bromosuccinate ChEBI	+	respiration
[Ref.: #25126]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #25126]	carnitine ChEBI	-	respiration
[Ref.: #25126]	casein	-	hydrolysis
[Ref.: #25126]	cellobiose ChEBI	-	respiration
[Ref.: #25126]	cellobiose ChEBI	+	fermentation
[Ref.: #25126]	chitin ChEBI	-	hydrolysis
[Ref.: #25126]	cis-aconitate ChEBI	-	respiration
[Ref.: #25126]	citrate ChEBI	-	respiration
[Ref.: #25126]	citrate ChEBI	-	carbon source
[Ref.: #25126]	D-alanine ChEBI	-	respiration
[Ref.: #25126]	D-arabitol ChEBI	-	respiration
[Ref.: #25126]	D-fructose ChEBI	-	respiration
[Ref.: #25126]	D-galactonic acid lactone ChEBI	-	respiration
[Ref.: #25126]	D-galactose ChEBI	-	respiration
[Ref.: #25126]	D-galacturonic acid ChEBI	-	respiration
[Ref.: #25126]	D-glucarate ChEBI	-	respiration
[Ref.: #25126]	D-gluconate ChEBI	-	respiration
[Ref.: #25126]	D-glucosaminic acid ChEBI	-	respiration
[Ref.: #25126]	D-glucose ChEBI	-	fermentation
[Ref.: #25126]	D-glucose ChEBI	-	assimilation
[Ref.: #25126]	D-glucose 6-phosphate ChEBI	-	respiration
[Ref.: #25126]	D-glucuronate ChEBI	-	respiration
[Ref.: #25126]	D-mannitol ChEBI	-	respiration
[Ref.: #25126]	D-mannitol ChEBI	-	assimilation
[Ref.: #25126]	D-mannose ChEBI	-	respiration
[Ref.: #25126]	D-mannose ChEBI	-	assimilation
[Ref.: #25126]	D-psicose ChEBI	-	respiration
[Ref.: #25126]	D-serine ChEBI	-	respiration
[Ref.: #25126]	D-sorbitol ChEBI	-	respiration
[Ref.: #25126]	decanoate ChEBI	-	assimilation
[Ref.: #25126]	dextrin ChEBI	-	respiration
[Ref.: #25126]	dna ChEBI	-	hydrolysis
[Ref.: #25126]	erythritol ChEBI	-	respiration
[Ref.: #25126]	esculin ChEBI	-	hydrolysis
[Ref.: #25126]	ethanolamine ChEBI	-	respiration
[Ref.: #25126]	formate ChEBI	-	respiration
[Ref.: #25126]	gamma-aminobutyric acid ChEBI	-	respiration
[Ref.: #25126]	gelatin ChEBI	-	hydrolysis
[Ref.: #25126]	gentiobiose ChEBI	-	respiration
[Ref.: #25126]	glucose 1-phosphate ChEBI	-	respiration
[Ref.: #25126]	glucuronamide ChEBI	-	respiration
[Ref.: #25126]	glycerol ChEBI	-	respiration
[Ref.: #25126]	glycerol 1-phosphate ChEBI	-	respiration
[Ref.: #25126]	glycogen ChEBI	-	respiration
[Ref.: #25126]	glycogen ChEBI	+	fermentation
[Ref.: #25126]	glycyl L-aspartic acid ChEBI	-	respiration
[Ref.: #25126]	glycyl-l-glutamate ChEBI	-	respiration
[Ref.: #25126]	inosine ChEBI	-	respiration
[Ref.: #25126]	itaconate ChEBI	-	respiration
[Ref.: #25126]	L-alaninamide ChEBI	-	respiration
[Ref.: #25126]	L-alanine ChEBI	-	respiration
[Ref.: #25126]	L-alanylglycine ChEBI	-	respiration
[Ref.: #25126]	L-arabinose ChEBI	-	respiration
[Ref.: #25126]	L-arabinose ChEBI	-	assimilation
[Ref.: #25126]	L-asparagine ChEBI	-	respiration
[Ref.: #25126]	L-aspartate ChEBI	-	respiration
[Ref.: #25126]	L-fucose ChEBI	-	respiration
[Ref.: #25126]	L-glutamate ChEBI	+	respiration
[Ref.: #25126]	L-histidine ChEBI	-	respiration
[Ref.: #25126]	L-leucine ChEBI	-	respiration
[Ref.: #25126]	L-ornithine ChEBI	-	respiration
[Ref.: #25126]	L-phenylalanine ChEBI	-	respiration
[Ref.: #25126]	L-proline ChEBI	+	respiration
[Ref.: #25126]	L-pyroglutamic acid ChEBI	-	respiration
[Ref.: #25126]	L-rhamnose ChEBI	-	respiration
[Ref.: #25126]	L-serine ChEBI	-	respiration
[Ref.: #25126]	L-threonine ChEBI	-	respiration
[Ref.: #25126]	lactate ChEBI	+	respiration
[Ref.: #25126]	lactulose ChEBI	-	respiration
[Ref.: #25126]	malate ChEBI	-	assimilation
[Ref.: #25126]	malonate ChEBI	-	respiration
[Ref.: #25126]	maltose ChEBI	-	assimilation
[Ref.: #25126]	maltose ChEBI	-	respiration
[Ref.: #25126]	maltose ChEBI	+	fermentation
[Ref.: #25126]	mannitol ChEBI	-	builds acid from
[Ref.: #25126]	melibiose ChEBI	-	respiration
[Ref.: #25126]	melibiose ChEBI	-	builds acid from
[Ref.: #25126]	methyl beta-D-glucopyranoside ChEBI	-	respiration
[Ref.: #25126]	methyl pyruvate ChEBI	+	respiration
[Ref.: #25126]	monomethyl succinate ChEBI	-	respiration
[Ref.: #25126]	myo-inositol ChEBI	-	builds acid from
[Ref.: #25126]	myo-inositol ChEBI	-	respiration
[Ref.: #25126]	N-acetylgalactosamine ChEBI	-	respiration
[Ref.: #25126]	N-acetylglucosamine ChEBI	-	respiration
[Ref.: #25126]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25126]	nitrate ChEBI	+	reduction
[Ref.: #25126]	nitrite ChEBI	+	reduction
[Ref.: #25126]	phenylacetate ChEBI	-	assimilation
[Ref.: #25126]	phenylethylamine ChEBI	-	respiration
[Ref.: #25126]	potassium gluconate ChEBI	-	assimilation
[Ref.: #25126]	propionate ChEBI	-	respiration
[Ref.: #25126]	putrescine ChEBI	-	respiration
[Ref.: #25126]	raffinose ChEBI	-	respiration
[Ref.: #25126]	rhamnose ChEBI	-	builds acid from
[Ref.: #25126]	ribitol ChEBI	-	respiration
[Ref.: #25126]	sebacic acid ChEBI	-	respiration
[Ref.: #25126]	sodium citrate ChEBI	-	assimilation
[Ref.: #25126]	sorbitol ChEBI	-	builds acid from
[Ref.: #25126]	starch ChEBI	-	hydrolysis
[Ref.: #25126]	starch ChEBI	+	fermentation
[Ref.: #25126]	succinamate ChEBI	-	respiration
[Ref.: #25126]	succinate ChEBI	+	respiration
[Ref.: #25126]	sucrose ChEBI	-	respiration
[Ref.: #25126]	sucrose ChEBI	-	builds acid from
[Ref.: #25126]	thymidine ChEBI	-	respiration
[Ref.: #25126]	trehalose ChEBI	-	respiration
[Ref.: #25126]	tryptophan ChEBI	-	energy source
[Ref.: #25126]	turanose ChEBI	-	respiration
[Ref.: #25126]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25126]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25126]	tween 40 ChEBI	+	respiration
[Ref.: #25126]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25126]	tween 80 ChEBI	+	respiration
[Ref.: #25126]	urea ChEBI	-	hydrolysis
[Ref.: #25126]	uridine ChEBI	-	respiration
[Ref.: #25126]	urocanic acid ChEBI	-	respiration
[Ref.: #25126]	xylitol ChEBI	-	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #25126]	acetoin ChEBI	no
[Ref.: #25126]	hydrogen sulfide ChEBI	no
[Ref.: #25126]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Indole test	Citrate test
[Ref.: #25126]	acetoin ChEBI	-
[Ref.: #25126]	citrate ChEBI			-
[Ref.: #25126]	indole ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #25126]	acid phosphatase	+	3.1.3.2
[Ref.: #25126]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25126]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25126]	beta-galactosidase	-	3.2.1.23
[Ref.: #25126]	catalase	-	1.11.1.6
[Ref.: #25126]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25126]	esterase (C 4)	+
[Ref.: #25126]	esterase Lipase (C 8)	+
[Ref.: #25126]	leucine arylamidase	+	3.4.11.1
[Ref.: #25126]	lipase (C 14)	+
[Ref.: #25126]	lysine decarboxylase	-	4.1.1.18
[Ref.: #25126]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25126]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #25126]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25126]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25126]	Sample type/isolated from	surface seawater
[Ref.: #25126]	Geographic location (country and/or sea, region)	South Pacific Gyre at station U1368
[Ref.: #25126]	Geographic location	-27.0000°/-123.0000°
[Ref.: #25126]	Enrichment culture	marine agar 2216 (MA; Becton Dickinson)
[Ref.: #25126]	Enrichment culture duration	7 days
[Ref.: #25126]	Enrichment culture temperature	28 ̊C

[Ref.: #67770]	Sample type/isolated from	Surface seawater of the South Pacific Gyre (27° 55' S 123° 10' W)
[Ref.: #67770]	Geographic location	-27.9167°/-123.1670°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ082124 (>99% sequence identity) for Bacterioplanoides pacificum subclade from Microbeatlas

Aquatic Samples	604
Soil Samples	23
Animal Samples	196
Plant Samples	1
Total Samples	824

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25126]	Thalassolituus sp. SW100 16S ribosomal RNA gene, partial sequence	JQ082124	1500	GenBank	1171596 tax ID

[Ref.: #25126]

GC-content

55.3 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25126]

Culture collection no.

JCM 30597, MCCC 1K00501, KCTC 42424

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacterioplanoides pacificum gen. nov., sp. nov., isolated from seawater of South Pacific Gyre.	Wang Y, Yu M, Liu Y, Yang X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001461	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25126

Y. Y. Wang, M.,Liu, Y.,Yang, X.,Zhang, X. H.: Bacterioplanoides pacificum gen. nov., sp. nov., isolated from seawater of South Pacific Gyre. IJSEM 66: 5010 - 5015 2016 ( DOI 10.1099/ijsem.0.001461 , PubMed 27566052 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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