Name: Fructilactobacillus ixorae Ru20-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133267

Type strain:

Species: Fructilactobacillus ixorae

Strain Designation: Ru20-1

Culture col. no.: LMG 29008, NBRC 111239, PCU 346, TISTR 2381, JCM 32627

Strain history: S. Tanasupawat; Chulalongkorn Univ., Thailand; Ru20-1.

NCBI tax ID(s): 1750535 (species)

Section

Fructilactobacillus ixorae Ru20-1 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from West Indian jasmine .

colony-forming
Gram-positive
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Fructilactobacillus*
	Species	**Fructilactobacillus ixorae**
	Full Scientific Name (LPSN)	Fructilactobacillus ixorae (Techo et al. 2016) Zheng et al. 2020

Synonym

Lactobacillus ixorae

Information on morphological and physiological properties Morphology

[Ref.: #25057]	Gram stain	positive

[Ref.: #25057]	Cell length	0.64-2.55 µm

[Ref.: #25057]	Cell width	0.35-0.47 mm

[Ref.: #25057]	Cell shape	rod-shaped

[Ref.: #25057]	Motility	no

[Ref.: #25057]	Colony size	0.12-0.14 mm
[Ref.: #25057]	Colony color	white
[Ref.: #25057]	Colony shape	circular
[Ref.: #25057]	Incubation period	2 days
[Ref.: #25057]	Cultivation medium used	MRS agar plates

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25057]

Culture medium

MRS agar plates

[Ref.: #25057]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #25057]		growth	15.0-40.0 °C
[Ref.: #25057]	no	growth	>40.0 °C
[Ref.: #25057]		optimum	30.0-37.0 °C
[Ref.: #67770]		growth	30 °C

[Ref.: #25057]	Temperature range	thermophilic
[Ref.: #25057]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25057]			optimum	6.5
[Ref.: #25057]			growth	4.5-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25057]

Oxygen tolerance

facultative anaerobe

[Ref.: #25057]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25057]		NaCl		optimum	1.0-2.0	%
[Ref.: #25057]		NaCl		growth	1.0-7.0	%(w/v)

[Ref.: #25057]	Murein short key	A11.31
[Ref.: #25057]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25057]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25057]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25057]	amygdalin ChEBI	-	builds acid from
[Ref.: #25057]	arbutin ChEBI	-	builds acid from
[Ref.: #25057]	arginine ChEBI	-	hydrolysis
[Ref.: #25057]	cellobiose ChEBI	-	builds acid from
[Ref.: #25057]	D-arabinose ChEBI	-	builds acid from
[Ref.: #25057]	D-arabitol ChEBI	-	builds acid from
[Ref.: #25057]	D-fructose ChEBI	+	builds acid from
[Ref.: #25057]	D-fucose ChEBI	-	builds acid from
[Ref.: #25057]	D-galactose ChEBI	-	builds acid from
[Ref.: #25057]	D-glucose ChEBI	+	builds acid from
[Ref.: #25057]	D-lyxose ChEBI	-	builds acid from
[Ref.: #25057]	D-mannose ChEBI	-	builds acid from
[Ref.: #25057]	D-xylose ChEBI	-	builds acid from
[Ref.: #25057]	erythritol ChEBI	-	builds acid from
[Ref.: #25057]	esculin ChEBI	-	hydrolysis
[Ref.: #25057]	esculin ChEBI	-	builds acid from
[Ref.: #25057]	galactitol ChEBI	-	builds acid from
[Ref.: #25057]	gentiobiose ChEBI	-	builds acid from
[Ref.: #25057]	glucose ChEBI	+	builds base from
[Ref.: #25057]	glycerol ChEBI	-	builds acid from
[Ref.: #25057]	glycogen ChEBI	-	builds acid from
[Ref.: #25057]	inulin ChEBI	-	builds acid from
[Ref.: #25057]	L-arabinose ChEBI	-	builds acid from
[Ref.: #25057]	L-arabitol ChEBI	-	builds acid from
[Ref.: #25057]	L-fucose ChEBI	-	builds acid from
[Ref.: #25057]	L-xylose ChEBI	-	builds acid from
[Ref.: #25057]	lactose ChEBI	-	builds acid from
[Ref.: #25057]	maltose ChEBI	-	builds acid from
[Ref.: #25057]	mannitol ChEBI	+	builds acid from
[Ref.: #25057]	melezitose ChEBI	-	builds acid from
[Ref.: #25057]	melibiose ChEBI	-	builds acid from
[Ref.: #25057]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #25057]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #25057]	methyl D-glucoside ChEBI	-	builds acid from
[Ref.: #25057]	myo-inositol ChEBI	-	builds acid from
[Ref.: #25057]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #25057]	nitrate ChEBI	-	reduction
[Ref.: #25057]	potassium gluconate ChEBI	+	fermentation
[Ref.: #25057]	raffinose ChEBI	-	builds acid from
[Ref.: #25057]	rhamnose ChEBI	-	builds acid from
[Ref.: #25057]	ribitol ChEBI	-	builds acid from
[Ref.: #25057]	ribose ChEBI	-	builds acid from
[Ref.: #25057]	starch ChEBI	-	hydrolysis
[Ref.: #25057]	sucrose ChEBI	-	builds acid from
[Ref.: #25057]	turanose ChEBI	-	builds acid from
[Ref.: #25057]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25057]		diacetyl ChEBI	yes
[Ref.: #25057]		lactate ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #25057]		catalase	-	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25057]	Sample type/isolated from	West Indian jasmine (Ixora coccinea L.)
[Ref.: #25057]	Geographic location (country and/or sea, region)	Kalasin province
[Ref.: #25057]	Country	Thailand
[Ref.: #25057]	Country ISO 3 Code	THA
[Ref.: #25057]	Continent	Asia
[Ref.: #25057]	Enrichment culture	MRS broth
[Ref.: #25057]	Enrichment culture composition	supplemented with 0.3 % CaCO3
[Ref.: #25057]	Enrichment culture duration	2 days
[Ref.: #25057]	Enrichment culture temperature	30 ̊C

[Ref.: #67770]	Sample type/isolated from	Flower (West- Indian jasmine) collected from Kalasin province
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Shrub (Scrub)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25057]	Lactobacillus ixorae gene for 16S ribosomal RNA, partial sequence	LC094494	1475	GenBank	1750535 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fructilactobacillus ixorae Ru20-1	GCA_024029915	complete	GenBank	1750535 tax ID	*

[Ref.: #25057]	GC-content	47.8 mol%
[Ref.: #67770]	GC-content	47.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fructilactobacillus ixorae Ru20-1 NCBI: GCA_024029915.1
[Ref.: #69480]	flagellated	no	99.056	yes
[Ref.: #69480]	gram-positive	yes	95.316	yes
[Ref.: #69480]	anaerobic	no	90.107	yes
[Ref.: #69480]	aerobic	no	93.849	yes
[Ref.: #69480]	halophile	yes	92.706	no
[Ref.: #69480]	spore-forming	no	97.16	no
[Ref.: #69480]	motile	no	97.083	yes
[Ref.: #69480]	glucose-ferment	yes	83.57	no
[Ref.: #69480]	thermophile	no	99.03	no
[Ref.: #69480]	glucose-util	yes	85.36	no

Availability in culture collections External links

[Ref.: #25057]

Culture collection no.

LMG 29008, NBRC 111239, PCU 346, TISTR 2381, JCM 32627

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25057

S. M. Techo, M.,Shibata, C.,Tanaka, N.,Wisetkhan, P.,Visessanguan, W.,Tanasupawat, S.: Lactobacillus ixorae sp. nov., isolated from a flower (West-Indian jasmine). IJSEM 66: 5500 - 5505 2016 ( DOI 10.1099/ijsem.0.001547 , PubMed 27902183 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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