Roseivirga seohaensis subsp. aquiponti (DSM 101709, KCTC 42709, D-25)

Name: Roseivirga seohaensis subsp. aquiponti (DSM 101709, KCTC 42709, D-25)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133263

Type strain

Strain Designation D-25

Culture col. no. DSM 101709 KCTC 42709 D-25

NCBI tax ID(s) 1566026

Special Collections DSMZ KCTC

Links

Roseivirga seohaensis subsp. aquiponti D-25 is a mesophilic prokaryote that was isolated from sea water.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 405652

DSM 101709

@ref 20215

Last LPSN update 2025-12-16 10:01:44

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Roseivirgaceae

Genus Roseivirga

Species Roseivirga seohaensis subsp. aquiponti

Full scientific name Roseivirga seohaensis subsp. aquiponti Selvaratnam et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.9
125438		90.5
125438	negative	95.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64140	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
64140	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.6

Spore formation

@ref	Spore formation	Confidence
125439		99.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
64140	sea water	Johor, Desaru Beach	Malaysia	MYS	Asia

Taxonmaps

69479

Global distribution of 16S sequence KM587636 (>99% sequence identity) for Roseivirga from Microbeatlas

Aquatic Samples	992
Soil Samples	42
Animal Samples	68
Plant Samples	8
Total Samples	1110

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64140	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM126795v1 assembly for Roseivirga seohaensis subsp. aquiponti D-25	contig	GCA_001267955	2603880179	1566026	69.27

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64140	Roseivirga seohaensis subsp. aquiponti strain D-25 16S ribosomal RNA gene, partial sequence	KM587636	1505		1566026

GC content

@ref	GC-content (mol%)	Method
64140	39.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Roseivirga seohaensis subsp. aquiponti D-25
NCBI: GCA_001267955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	no	68.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Roseivirga seohaensis subsp. aquiponti D-25
NCBI: GCA_001267955.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.50	no
125438	anaerobic	anaerobicⓘ	no	98.22	no
125438	aerobic	aerobicⓘ	yes	86.58	no
125438	spore-forming	spore-formingⓘ	no	89.16	no
125438	thermophilic	thermophileⓘ	no	91.57	yes
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal to reclassify Roseivirga ehrenbergii (Nedashkovskaya et al., 2008) as Roseivirga seohaensis comb. nov., description of Roseivirga seohaensis subsp. aquiponti subsp. nov. and emendation of the genus Roseivirga.	Selvaratnam C, Thevarajoo S, Goh KM, Chan KG, Chong CS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001553	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64140	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101709
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Roseivirga seohaensis subsp. aquiponti (DSM 101709, KCTC 42709, D-25)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001267955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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