Name: Roseivirga ehrenbergii SW-152
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133262

Type strain:

Species: Roseivirga ehrenbergii

Strain Designation: SW-152

Culture col. no.: JCM 12600, KCTC 12312, CIP 108749

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 1914963 (species), 1914965 (subspecies)

Special Collections

Other strains from Roseivirga ehrenbergii

Section

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Roseivirga ehrenbergii SW-152 is an aerobe, motile bacterium that forms circular colonies and has a orange pigmentation.

colony-forming
motile
pigmented
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Roseivirgaceae*
	Genus	*Roseivirga*
	Species	**Roseivirga ehrenbergii**
	Full Scientific Name (LPSN)	Roseivirga ehrenbergii Nedashkovskaya et al. 2005

	Synonym	Roseivirga seohaensis
	Synonym	Marinicola seohaensis

Information on morphological and physiological properties Morphology

[Ref.: #25046]	Gram stain	negative
[Ref.: #31413]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #25046]	Cell length	1.4-2.5 µm
[Ref.: #31413]	Cell length	3 µm
[Ref.: #25046]	Cell length	1.1 µm

[Ref.: #25046]	Cell width	0.5-0.7 µm
[Ref.: #31413]	Cell width	0.25 µm
[Ref.: #25046]	Cell width	0.5-0.6 µm

[Ref.: #25046]	Cell shape	rod-shaped
[Ref.: #31413]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31413]	Motility	yes
[Ref.: #25046]	Motility	yes

[Ref.: #31413]	Flagellum arrangement	gliding

[Ref.: #25046]	Colony size	1.0-3.0 mm
[Ref.: #25046]	Colony shape	circular
[Ref.: #25046]	Incubation period	2 days
[Ref.: #25046]	Cultivation medium used	MA

[Ref.: #25046]	Pigment production	yes
[Ref.: #25046]	Pigmentation color	orange
[Ref.: #25046]	Pigment production	yes
[Ref.: #25046]	Pigmentation color	pink
[Ref.: #31413]	Pigment production	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25046]

Culture medium

Marine agar (MA)

[Ref.: #25046]

Culture medium growth

		Temperature
[Ref.: #25046]	growth	4-40 °C
[Ref.: #25046]	optimum	37 °C
[Ref.: #31413]	growth	04-40 °C
[Ref.: #31413]	optimum	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

		pH
[Ref.: #25046]	optimum	7
[Ref.: #31413]	optimum	7.5
[Ref.: #25046]	growth	5.5-9.0
[Ref.: #25046]	growth	5.0-10.0
[Ref.: #31413]	growth	5.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25046]	Oxygen tolerance	aerobe
[Ref.: #31413]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31413]

Ability of spore formation

	Salt		Salt conc.
[Ref.: #25046]	NaCl	growth	2.0-9.0	%(w/v)
[Ref.: #25046]	NaCl	growth	2.0-5.0	%(w/v)
[Ref.: #25046]	NaCl	optimum	2	%(w/v)
[Ref.: #31413]	NaCl	growth	<9	%
[Ref.: #31413]	NaCl	optimum	2.5	%

[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25046]	2-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #25046]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #25046]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #25046]	esculin ferric citrate	+	builds acid from
[Ref.: #25046]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #25046]	nitrate ChEBI	-	reduction
[Ref.: #25046]	tween 20 ChEBI	+	hydrolysis
[Ref.: #31413]	tween 20 ChEBI	+	carbon source
[Ref.: #25046]	tween 40 ChEBI	+	hydrolysis
[Ref.: #31413]	tween 40 ChEBI	+	carbon source
[Ref.: #25046]	tween 60 ChEBI	+	hydrolysis
[Ref.: #31413]	tween 60 ChEBI	+	carbon source
[Ref.: #25046]	tween 80 ChEBI	+	hydrolysis
[Ref.: #31413]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #25046]	bacitracin ChEBI	yes	45	µg (disc)
[Ref.: #25046]	bacitracin ChEBI	no	45	µg (disc)
[Ref.: #25046]	lincomycin ChEBI	yes	30	µg (disc)
[Ref.: #25046]	lincomycin ChEBI	no	30	µg (disc)
[Ref.: #25046]	polymyxin b ChEBI	yes	300	Unit (disc)
[Ref.: #25046]	polymyxin b ChEBI	no	300	Unit (disc)

	Enzyme	Enzyme activity	EC number
[Ref.: #25046]	acid phosphatase	+	3.1.3.2
[Ref.: #31413]	acid phosphatase	+	3.1.3.2
[Ref.: #25046]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31413]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25046]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #25046]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25046]	alpha-mannosidase	+	3.2.1.24
[Ref.: #25046]	beta-galactosidase	-	3.2.1.23
[Ref.: #25046]	beta-glucosidase	-	3.2.1.21
[Ref.: #31413]	catalase	+	1.11.1.6
[Ref.: #25046]	cystine arylamidase	+	3.4.11.3
[Ref.: #31413]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25046]	esterase (C 4)	+
[Ref.: #25046]	esterase lipase (C 8)	+
[Ref.: #25046]	leucine arylamidase	+	3.4.11.1
[Ref.: #25046]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #25046]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25046]	trypsin	-	3.4.21.4
[Ref.: #25046]	trypsin	+	3.4.21.4
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25046]	Sample type/isolated from	seawater
[Ref.: #25046]	Geographic location (country and/or sea, region)	Desaru Beach, Johor
[Ref.: #25046]	Country	Malaysia
[Ref.: #25046]	Country ISO 3 Code	MYS
[Ref.: #25046]	Continent	Asia
[Ref.: #25046]	Enrichment culture duration	2 days
[Ref.: #25046]	Enrichment culture temperature	30 ̊C
[Ref.: #25046]	Isolation date	2013-09
[Ref.: #25046]	Isolation/enrichment procedure	standard serial dilution technique

[Ref.: #67770]	Sample type/isolated from	Seawater of the Yellow Sea
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	the West Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY739663 (>99% sequence identity) for Roseivirga from Microbeatlas

Aquatic Samples	992
Soil Samples	42
Animal Samples	68
Plant Samples	8
Total Samples	1110

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31413]	Marinicola seohaensis strain SW-152 16S ribosomal RNA gene, partial sequence	AY739663	1472	GenBank ENA	1914963 tax ID

[Ref.: #25046]	GC-content	39.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	40.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	40.7 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67771]	GC-content	40.3 mol%

Availability in culture collections External links

[Ref.: #25046]

Culture collection no.

JCM 12600, KCTC 12312, CIP 108749

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinicola seohaensis gen. nov., sp. nov., isolated from sea water of the Yellow Sea, Korea.	Yoon JH, Kang SJ, Lee CH, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63492-0	2005	*
Phylogeny	Proposal to reclassify Roseivirga ehrenbergii (Nedashkovskaya et al., 2008) as Roseivirga seohaensis comb. nov., description of Roseivirga seohaensis subsp. aquiponti subsp. nov. and emendation of the genus Roseivirga.	Selvaratnam C, Thevarajoo S, Goh KM, Chan KG, Chong CS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001553	2016	*
Phylogeny	Reclassification of Roseivirga seohaensis (Yoon et al. 2005) Lau et al. 2006 as a later synonym of Roseivirga ehrenbergii Nedashkovskaya et al. 2005 and emendation of the species description.	Nedashkovskaya OI, Kim SB, Lysenko AM, Kalinovskaya NI, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.65686-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25046

C. T. Selvaratnam, S.,Goh, K. M.,Chan, K. G.,Chong, C. S.: Proposal to reclassify Roseivirga ehrenbergii (Nedashkovskaya et al., 2008) as Roseivirga seohaensis comb. nov., description of Roseivirga seohaensis subsp. aquiponti subsp. nov. and emendation of the genus Roseivirga. IJSEM 66: 5537 - 5543 2016 ( DOI 10.1099/ijsem.0.001553 , PubMed 28077207 )

#31413

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27720 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27720

IJSEM 859 2005 ( DOI 10.1099/ijs.0.63492-0 , PubMed 15774675 )

* These data were automatically processed and therefore are not curated

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